Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC010615.1-201ENST00000594254 1764 ntBASIC2.69□□□□□ -1.98
SMARCA1P28370 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.69□□□□□ -1.98
SMARCA1P28370 Y_RNA.16-201ENST00000362421 102 ntBASIC2.69□□□□□ -1.98
SMARCA1P28370 RNA5SP432-201ENST00000362480 116 ntBASIC2.69□□□□□ -1.98
SMARCA1P28370 Y_RNA.288-201ENST00000364854 92 ntBASIC2.69□□□□□ -1.98
SMARCA1P28370 Y_RNA.401-201ENST00000383965 117 ntBASIC2.69□□□□□ -1.98
SMARCA1P28370 Y_RNA.518-201ENST00000384552 113 ntBASIC2.69□□□□□ -1.98
SMARCA1P28370 MIR300-201ENST00000401138 83 ntBASIC2.69□□□□□ -1.98
SMARCA1P28370 RNU4-53P-201ENST00000410828 140 ntBASIC2.69□□□□□ -1.98
SMARCA1P28370 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.69□□□□□ -1.98
SMARCA1P28370 RPL23AP3-201ENST00000453844 468 ntBASIC2.69□□□□□ -1.98
SMARCA1P28370 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.69□□□□□ -1.98
SMARCA1P28370 HMGB3P17-201ENST00000504195 649 ntBASIC2.69□□□□□ -1.98
SMARCA1P28370 IGLV3-17-201ENST00000519099 244 ntBASIC2.69□□□□□ -1.98
SMARCA1P28370 SNORD113-5-201ENST00000607261 78 ntBASIC2.69□□□□□ -1.98
SMARCA1P28370 AC062037.2-201ENST00000610137 73 ntBASIC2.69□□□□□ -1.98
SMARCA1P28370 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.69□□□□□ -1.98
SMARCA1P28370 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.69□□□□□ -1.98
SMARCA1P28370 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
SMARCA1P28370 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.69□□□□□ -1.98
SMARCA1P28370 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
SMARCA1P28370 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
SMARCA1P28370 SNORD81.1-201ENST00000363064 77 ntBASIC2.68□□□□□ -1.98
SMARCA1P28370 RNU6-1310P-201ENST00000384153 107 ntBASIC2.68□□□□□ -1.98
SMARCA1P28370 RNU1-148P-201ENST00000384472 162 ntBASIC2.68□□□□□ -1.98
SMARCA1P28370 RNA5SP475-201ENST00000410568 110 ntBASIC2.68□□□□□ -1.98
SMARCA1P28370 AC096920.1-201ENST00000423991 241 ntBASIC2.68□□□□□ -1.98
SMARCA1P28370 NDUFB4P10-201ENST00000452541 359 ntBASIC2.68□□□□□ -1.98
SMARCA1P28370 SEPT14P8-201ENST00000508026 178 ntBASIC2.68□□□□□ -1.98
SMARCA1P28370 RNA5SP402-201ENST00000517148 110 ntBASIC2.68□□□□□ -1.98
SMARCA1P28370 RNU6-667P-201ENST00000517186 102 ntBASIC2.68□□□□□ -1.98
SMARCA1P28370 AC023157.2-201ENST00000540596 141 ntBASIC2.68□□□□□ -1.98
SMARCA1P28370 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.68□□□□□ -1.98
SMARCA1P28370 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
SMARCA1P28370 AC080100.1-201ENST00000624239 5356 ntBASIC2.68□□□□□ -1.98
SMARCA1P28370 SNORA72.2-201ENST00000365028 127 ntBASIC2.67□□□□□ -1.98
SMARCA1P28370 Y_RNA.446-201ENST00000384178 104 ntBASIC2.67□□□□□ -1.98
SMARCA1P28370 RNU6-1026P-201ENST00000384465 108 ntBASIC2.67□□□□□ -1.98
SMARCA1P28370 AC016925.1-201ENST00000458303 298 ntBASIC2.67□□□□□ -1.98
SMARCA1P28370 RNA5SP490-201ENST00000517141 136 ntBASIC2.67□□□□□ -1.98
SMARCA1P28370 AC091544.4-201ENST00000555268 342 ntBASIC2.67□□□□□ -1.98
SMARCA1P28370 SNORD53-201ENST00000579969 78 ntBASIC2.67□□□□□ -1.98
SMARCA1P28370 MIR3945-201ENST00000581853 98 ntBASIC2.67□□□□□ -1.98
SMARCA1P28370 AC006006.1-201ENST00000603082 144 ntBASIC2.67□□□□□ -1.98
SMARCA1P28370 MIR6766-201ENST00000622641 72 ntBASIC2.67□□□□□ -1.98
SMARCA1P28370 U6.104-201ENST00000637979 90 ntBASIC2.67□□□□□ -1.98
SMARCA1P28370 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
SMARCA1P28370 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
SMARCA1P28370 Y_RNA.237-201ENST00000364439 102 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 MIR1185-2-201ENST00000408687 86 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 RNU2-38P-201ENST00000410856 79 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 AL390729.2-201ENST00000416137 156 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 AL356320.1-201ENST00000429616 163 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 AC016717.1-201ENST00000448918 286 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 RNU6-1132P-201ENST00000459214 107 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 RNU7-57P-201ENST00000459540 60 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 HMGB3P3-201ENST00000510526 400 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 RNU6-991P-201ENST00000516168 107 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 DEFB108E-201ENST00000524692 240 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 NDUFA5P6-201ENST00000542110 379 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 MIR4753-201ENST00000585119 83 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 AC025754.2-201ENST00000606491 432 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.66□□□□□ -1.98
SMARCA1P28370 AL590240.4-201ENST00000616908 390 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 AC127459.3-201ENST00000624328 466 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
SMARCA1P28370 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.66□□□□□ -1.98
SMARCA1P28370 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
SMARCA1P28370 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.98
SMARCA1P28370 MTND5P6-201ENST00000422338 1798 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 RNU4-90P-201ENST00000362773 141 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 Y_RNA.307-201ENST00000365022 117 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 Y_RNA.331-201ENST00000365267 102 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 RNU6-418P-201ENST00000384035 107 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 RNU6-975P-201ENST00000384296 105 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 RNU6-21P-201ENST00000384710 107 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
SMARCA1P28370 RNA5SP181-201ENST00000410246 98 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 RNU2-54P-201ENST00000410299 190 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 TOMM22P2-201ENST00000430735 237 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 MTND1P19-201ENST00000511780 315 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 RNU6-1338P-201ENST00000516328 91 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 Y_RNA.680-201ENST00000516441 93 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 RNA5SP281-201ENST00000516504 135 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 RNU2-12P-201ENST00000517216 168 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.65□□□□□ -1.99
SMARCA1P28370 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.65□□□□□ -1.99
SMARCA1P28370 AC012433.1-201ENST00000588916 398 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 AC008749.1-201ENST00000597650 306 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 MIR6895-201ENST00000613497 78 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 AC245884.12-201ENST00000615364 59 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 AC064859.1-201ENST00000624741 174 ntBASIC2.65□□□□□ -1.99
SMARCA1P28370 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
SMARCA1P28370 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
SMARCA1P28370 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
SMARCA1P28370 MIR340-201ENST00000362125 95 ntBASIC2.64□□□□□ -1.99
SMARCA1P28370 RNU1-91P-201ENST00000364746 163 ntBASIC2.64□□□□□ -1.99
SMARCA1P28370 RNU6-290P-201ENST00000365212 101 ntBASIC2.64□□□□□ -1.99
SMARCA1P28370 RNU6-438P-201ENST00000365561 103 ntBASIC2.64□□□□□ -1.99
SMARCA1P28370 SNORA6-201ENST00000384033 151 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 126.6 ms