Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MIR487A-201ENST00000385009 80 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 SNORA40.3-201ENST00000390964 122 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 RNU2-70P-201ENST00000410718 179 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 AL663109.1-201ENST00000411498 844 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC0.22□□□□□ -2.37
HLA-DMBP28068 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC0.22□□□□□ -2.37
HLA-DMBP28068 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.22□□□□□ -2.37
HLA-DMBP28068 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC0.22□□□□□ -2.37
HLA-DMBP28068 DAP3P1-201ENST00000441522 278 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 ZNF736P12Y-201ENST00000443152 1243 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 MRPS10P1-201ENST00000448483 130 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 RNU7-12P-201ENST00000516030 62 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 RNU6-445P-201ENST00000516949 107 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC0.22□□□□□ -2.37
HLA-DMBP28068 MTND1P35-201ENST00000526739 508 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC0.22□□□□□ -2.37
HLA-DMBP28068 AC022306.3-201ENST00000619930 550 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 AC006435.5-201ENST00000624486 112 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 FER-210ENST00000628534 558 ntTSL 5 BASIC0.22□□□□□ -2.37
HLA-DMBP28068 MIR924-201ENST00000638017 53 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 RNU6-137P-201ENST00000363680 108 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 RNU6-1329P-201ENST00000365664 107 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 RNU6-297P-201ENST00000384636 107 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 MIR526A1-201ENST00000384897 85 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 MTCO2P12-201ENST00000427426 682 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 MTND4P32-201ENST00000437189 1237 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.21□□□□□ -2.38
HLA-DMBP28068 SNORD42A-201ENST00000459584 64 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 AP000870.1-201ENST00000472927 406 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 AC002350.1-201ENST00000490759 375 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 RPL23AP75-201ENST00000491601 451 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.21□□□□□ -2.38
HLA-DMBP28068 CCDC34P1-201ENST00000507441 517 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC0.21□□□□□ -2.38
HLA-DMBP28068 RNA5SP134-201ENST00000516492 96 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 7SK.7-201ENST00000603504 247 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 HULC.1-201ENST00000612720 240 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 AC007014.2-201ENST00000615581 479 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 7SK.10-201ENST00000621414 298 ntBASIC0.21□□□□□ -2.38
HLA-DMBP28068 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.21□□□□□ -2.38
HLA-DMBP28068 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
HLA-DMBP28068 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
HLA-DMBP28068 Y_RNA.330-201ENST00000365230 109 ntBASIC0.2□□□□□ -2.38
HLA-DMBP28068 MIR562-201ENST00000384894 95 ntBASIC0.2□□□□□ -2.38
HLA-DMBP28068 RNU6-248P-201ENST00000410720 107 ntBASIC0.2□□□□□ -2.38
HLA-DMBP28068 MRPS18CP6-201ENST00000423587 223 ntBASIC0.2□□□□□ -2.38
HLA-DMBP28068 AL358176.2-201ENST00000425769 204 ntBASIC0.2□□□□□ -2.38
HLA-DMBP28068 SNORA68.3-201ENST00000515906 83 ntBASIC0.2□□□□□ -2.38
HLA-DMBP28068 SNORA18.6-201ENST00000516792 115 ntBASIC0.2□□□□□ -2.38
HLA-DMBP28068 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.2□□□□□ -2.38
HLA-DMBP28068 AC027288.2-201ENST00000553028 243 ntBASIC0.2□□□□□ -2.38
HLA-DMBP28068 AC023827.1-201ENST00000569247 97 ntBASIC0.2□□□□□ -2.38
HLA-DMBP28068 CPDP1-201ENST00000579660 283 ntBASIC0.2□□□□□ -2.38
HLA-DMBP28068 MIR8076-201ENST00000611401 83 ntBASIC0.2□□□□□ -2.38
HLA-DMBP28068 AL136317.1-201ENST00000612653 226 ntBASIC0.2□□□□□ -2.38
HLA-DMBP28068 AC122133.1-201ENST00000613964 233 ntBASIC0.2□□□□□ -2.38
HLA-DMBP28068 AC091925.1-201ENST00000623204 462 ntBASIC0.2□□□□□ -2.38
HLA-DMBP28068 AC008133.2-201ENST00000624540 351 ntBASIC0.2□□□□□ -2.38
HLA-DMBP28068 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.2□□□□□ -2.38
HLA-DMBP28068 AC090625.1-201ENST00000357130 210 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 MIRLET7D-201ENST00000362263 87 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 RNA5SP325-201ENST00000363756 130 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 SNORD87-201ENST00000364849 89 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 RNA5SP219-201ENST00000390940 113 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 RNA5SP482-201ENST00000391269 118 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 RNU2-9P-201ENST00000410194 145 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 MTCO3P19-201ENST00000415864 321 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC0.19□□□□□ -2.38
HLA-DMBP28068 SNORD65B-201ENST00000459126 73 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC0.19□□□□□ -2.38
HLA-DMBP28068 RNU6-341P-201ENST00000516973 96 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 RNU6-58P-201ENST00000517143 103 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 AP001372.4-201ENST00000524889 472 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC0.19□□□□□ -2.38
HLA-DMBP28068 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.19□□□□□ -2.38
HLA-DMBP28068 MIR4514-201ENST00000581410 57 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 MIR5093-201ENST00000583199 100 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 AC090616.2-202ENST00000584248 222 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 AC091178.2-201ENST00000584401 117 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 MIR4424-201ENST00000585257 86 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 AC087683.2-201ENST00000611384 326 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 MIR8087-201ENST00000612745 78 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 AC005592.1-201ENST00000566527 1640 ntBASIC0.19□□□□□ -2.38
HLA-DMBP28068 MIR103A2-201ENST00000362154 78 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 MIR330-201ENST00000362196 94 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 RNU6-1120P-201ENST00000362988 108 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 Y_RNA.336-201ENST00000365307 109 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 MIR1185-1-201ENST00000408598 86 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 BX295541.1-201ENST00000417774 250 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 CYCSP46-201ENST00000423569 204 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 MTCO3P38-201ENST00000468910 766 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 AC108740.1-201ENST00000498629 225 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.18□□□□□ -2.38
HLA-DMBP28068 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC0.18□□□□□ -2.38
HLA-DMBP28068 AC097462.1-201ENST00000514125 324 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 SNORA62.5-201ENST00000516634 120 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 RNU2-56P-201ENST00000516826 190 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 MTND4P7-201ENST00000523876 130 ntBASIC0.18□□□□□ -2.38
HLA-DMBP28068 MDM2-233ENST00000545204 398 ntTSL 5 BASIC0.18□□□□□ -2.38
HLA-DMBP28068 AC011195.1-201ENST00000578177 177 ntBASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms