Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC024995.1-201ENST00000523014 93 ntBASIC1.42□□□□□ -2.18
SDC3O75056 AC005014.2-201ENST00000607795 599 ntBASIC1.42□□□□□ -2.18
SDC3O75056 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.42□□□□□ -2.18
SDC3O75056 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.42□□□□□ -2.18
SDC3O75056 AC006001.4-201ENST00000622243 395 ntBASIC1.42□□□□□ -2.18
SDC3O75056 CASC19-280ENST00000642102 1351 ntBASIC1.42□□□□□ -2.18
SDC3O75056 ICE2P2-201ENST00000483823 2787 ntBASIC1.41□□□□□ -2.18
SDC3O75056 RNU6-845P-201ENST00000362578 103 ntBASIC1.41□□□□□ -2.18
SDC3O75056 Y_RNA.48-201ENST00000362710 103 ntBASIC1.41□□□□□ -2.18
SDC3O75056 RNU6-271P-201ENST00000363858 105 ntBASIC1.41□□□□□ -2.18
SDC3O75056 SNORD87-201ENST00000364849 89 ntBASIC1.41□□□□□ -2.18
SDC3O75056 RNU6-1240P-201ENST00000365155 104 ntBASIC1.41□□□□□ -2.18
SDC3O75056 Y_RNA.415-201ENST00000384012 112 ntBASIC1.41□□□□□ -2.18
SDC3O75056 RNU6-281P-201ENST00000384212 103 ntBASIC1.41□□□□□ -2.18
SDC3O75056 RNU6-601P-201ENST00000384540 107 ntBASIC1.41□□□□□ -2.18
SDC3O75056 RPL37P10-201ENST00000412884 288 ntBASIC1.41□□□□□ -2.18
SDC3O75056 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.41□□□□□ -2.18
SDC3O75056 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.41□□□□□ -2.18
SDC3O75056 MTND1P2-201ENST00000430604 821 ntBASIC1.41□□□□□ -2.18
SDC3O75056 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.41□□□□□ -2.18
SDC3O75056 RNU7-30P-201ENST00000516835 62 ntBASIC1.41□□□□□ -2.18
SDC3O75056 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.41□□□□□ -2.18
SDC3O75056 SNORA77B-201ENST00000578179 125 ntBASIC1.41□□□□□ -2.18
SDC3O75056 AC010999.1-201ENST00000611856 324 ntBASIC1.41□□□□□ -2.18
SDC3O75056 AL353770.2-201ENST00000620024 78 ntBASIC1.41□□□□□ -2.18
SDC3O75056 AC091895.1-201ENST00000624494 256 ntBASIC1.41□□□□□ -2.18
SDC3O75056 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SDC3O75056 Y_RNA.88-201ENST00000363029 99 ntBASIC1.4□□□□□ -2.19
SDC3O75056 MIR190B-201ENST00000401119 79 ntBASIC1.4□□□□□ -2.19
SDC3O75056 MIR1253-201ENST00000408273 105 ntBASIC1.4□□□□□ -2.19
SDC3O75056 RNU6-955P-201ENST00000410497 104 ntBASIC1.4□□□□□ -2.19
SDC3O75056 RN7SKP51-201ENST00000410781 304 ntBASIC1.4□□□□□ -2.19
SDC3O75056 USP9YP16-201ENST00000430287 407 ntBASIC1.4□□□□□ -2.19
SDC3O75056 AL445305.1-201ENST00000432577 575 ntBASIC1.4□□□□□ -2.19
SDC3O75056 SNRPGP13-201ENST00000442212 177 ntBASIC1.4□□□□□ -2.19
SDC3O75056 USP9YP23-201ENST00000455085 407 ntBASIC1.4□□□□□ -2.19
SDC3O75056 Y_RNA.675-201ENST00000516389 149 ntBASIC1.4□□□□□ -2.19
SDC3O75056 Y_RNA.691-201ENST00000516611 103 ntBASIC1.4□□□□□ -2.19
SDC3O75056 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.4□□□□□ -2.19
SDC3O75056 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.4□□□□□ -2.19
SDC3O75056 AC090617.3-201ENST00000573670 475 ntBASIC1.4□□□□□ -2.19
SDC3O75056 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.4□□□□□ -2.19
SDC3O75056 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SDC3O75056 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SDC3O75056 Y_RNA.2-201ENST00000362330 96 ntBASIC1.39□□□□□ -2.19
SDC3O75056 Y_RNA.106-201ENST00000363189 100 ntBASIC1.39□□□□□ -2.19
SDC3O75056 Y_RNA.160-201ENST00000363677 92 ntBASIC1.39□□□□□ -2.19
SDC3O75056 Y_RNA.184-201ENST00000363884 108 ntBASIC1.39□□□□□ -2.19
SDC3O75056 Y_RNA.508-201ENST00000384502 114 ntBASIC1.39□□□□□ -2.19
SDC3O75056 RNU6-417P-201ENST00000384712 107 ntBASIC1.39□□□□□ -2.19
SDC3O75056 MT-TL1-201ENST00000386347 75 ntBASIC1.39□□□□□ -2.19
SDC3O75056 RNU6-700P-201ENST00000391043 107 ntBASIC1.39□□□□□ -2.19
SDC3O75056 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.39□□□□□ -2.19
SDC3O75056 MTCYBP10-201ENST00000424905 650 ntBASIC1.39□□□□□ -2.19
SDC3O75056 HMGN1P7-201ENST00000491722 313 ntBASIC1.39□□□□□ -2.19
SDC3O75056 Y_RNA.683-201ENST00000516508 93 ntBASIC1.39□□□□□ -2.19
SDC3O75056 AP003033.1-201ENST00000527244 415 ntBASIC1.39□□□□□ -2.19
SDC3O75056 MIR5695-201ENST00000579717 85 ntBASIC1.39□□□□□ -2.19
SDC3O75056 AC005899.2-201ENST00000584353 90 ntBASIC1.39□□□□□ -2.19
SDC3O75056 MZT1P2-201ENST00000604387 248 ntBASIC1.39□□□□□ -2.19
SDC3O75056 AC009229.3-201ENST00000608056 282 ntBASIC1.39□□□□□ -2.19
SDC3O75056 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.39□□□□□ -2.19
SDC3O75056 AC099654.5-201ENST00000636479 350 ntBASIC1.39□□□□□ -2.19
SDC3O75056 RNY1P16-201ENST00000363063 111 ntBASIC1.38□□□□□ -2.19
SDC3O75056 RNU6-727P-201ENST00000363592 107 ntBASIC1.38□□□□□ -2.19
SDC3O75056 SNORA33-201ENST00000363664 130 ntBASIC1.38□□□□□ -2.19
SDC3O75056 Y_RNA.355-201ENST00000365462 98 ntBASIC1.38□□□□□ -2.19
SDC3O75056 Y_RNA.364-201ENST00000365532 101 ntBASIC1.38□□□□□ -2.19
SDC3O75056 Y_RNA.473-201ENST00000384333 102 ntBASIC1.38□□□□□ -2.19
SDC3O75056 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
SDC3O75056 MIR1276-201ENST00000408707 83 ntBASIC1.38□□□□□ -2.19
SDC3O75056 EIF1P2-201ENST00000428233 350 ntBASIC1.38□□□□□ -2.19
SDC3O75056 CYCSP23-201ENST00000519781 313 ntBASIC1.38□□□□□ -2.19
SDC3O75056 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.38□□□□□ -2.19
SDC3O75056 AC005668.1-201ENST00000571142 476 ntBASIC1.38□□□□□ -2.19
SDC3O75056 AC022306.2-201ENST00000617563 647 ntBASIC1.38□□□□□ -2.19
SDC3O75056 MTND5P16-201ENST00000460269 1703 ntBASIC1.37□□□□□ -2.19
SDC3O75056 MTND5P35-201ENST00000557537 1720 ntBASIC1.37□□□□□ -2.19
SDC3O75056 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.37□□□□□ -2.19
SDC3O75056 RNU6-222P-201ENST00000362438 107 ntBASIC1.37□□□□□ -2.19
SDC3O75056 SNORD1A-201ENST00000364968 72 ntBASIC1.37□□□□□ -2.19
SDC3O75056 RNU6-53P-201ENST00000365367 106 ntBASIC1.37□□□□□ -2.19
SDC3O75056 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.37□□□□□ -2.19
SDC3O75056 RNA5SP467-201ENST00000391274 118 ntBASIC1.37□□□□□ -2.19
SDC3O75056 AL161935.2-201ENST00000414627 60 ntBASIC1.37□□□□□ -2.19
SDC3O75056 PDCL2P1-201ENST00000419302 352 ntBASIC1.37□□□□□ -2.19
SDC3O75056 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.37□□□□□ -2.19
SDC3O75056 MTND4P18-201ENST00000447010 465 ntBASIC1.37□□□□□ -2.19
SDC3O75056 MTND3P10-201ENST00000450967 341 ntBASIC1.37□□□□□ -2.19
SDC3O75056 RPS26P55-201ENST00000471178 356 ntBASIC1.37□□□□□ -2.19
SDC3O75056 RPS26P45-201ENST00000471748 340 ntBASIC1.37□□□□□ -2.19
SDC3O75056 AC079140.2-201ENST00000506193 142 ntBASIC1.37□□□□□ -2.19
SDC3O75056 RNA5SP445-201ENST00000515889 115 ntBASIC1.37□□□□□ -2.19
SDC3O75056 RNU6-307P-201ENST00000516743 106 ntBASIC1.37□□□□□ -2.19
SDC3O75056 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.37□□□□□ -2.19
SDC3O75056 AC093023.1-201ENST00000547375 507 ntBASIC1.37□□□□□ -2.19
SDC3O75056 AC022432.1-201ENST00000595739 310 ntBASIC1.37□□□□□ -2.19
SDC3O75056 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.37□□□□□ -2.19
SDC3O75056 U6.108-201ENST00000637764 58 ntBASIC1.37□□□□□ -2.19
SDC3O75056 MIR302D-201ENST00000362275 68 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 183.3 ms