Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC245166.1-201ENST00000521012 253 ntBASIC3.48□□□□□ -1.85
CCDC9Q9Y3X0 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC9Q9Y3X0 AC006504.6-201ENST00000590142 199 ntBASIC3.48□□□□□ -1.85
CCDC9Q9Y3X0 MIR7111-201ENST00000619751 72 ntBASIC3.48□□□□□ -1.85
CCDC9Q9Y3X0 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
CCDC9Q9Y3X0 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC9Q9Y3X0 SNORA63.7-201ENST00000365579 123 ntBASIC3.47□□□□□ -1.85
CCDC9Q9Y3X0 Y_RNA.645-201ENST00000391229 102 ntBASIC3.47□□□□□ -1.85
CCDC9Q9Y3X0 MIR1253-201ENST00000408273 105 ntBASIC3.47□□□□□ -1.85
CCDC9Q9Y3X0 MIR1283-2-201ENST00000408621 87 ntBASIC3.47□□□□□ -1.85
CCDC9Q9Y3X0 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC9Q9Y3X0 RNU2-19P-201ENST00000517288 84 ntBASIC3.47□□□□□ -1.85
CCDC9Q9Y3X0 AC010205.1-201ENST00000616668 449 ntBASIC3.47□□□□□ -1.85
CCDC9Q9Y3X0 MIR203B-201ENST00000636080 86 ntBASIC3.47□□□□□ -1.85
CCDC9Q9Y3X0 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
CCDC9Q9Y3X0 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC9Q9Y3X0 MIR26A1-201ENST00000362205 77 ntBASIC3.46□□□□□ -1.86
CCDC9Q9Y3X0 Y_RNA.422-201ENST00000384054 114 ntBASIC3.46□□□□□ -1.86
CCDC9Q9Y3X0 AL353689.1-201ENST00000438895 199 ntBASIC3.46□□□□□ -1.86
CCDC9Q9Y3X0 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC9Q9Y3X0 AC003982.1-202ENST00000469928 248 ntBASIC3.46□□□□□ -1.86
CCDC9Q9Y3X0 RPL26P26-201ENST00000480251 434 ntBASIC3.46□□□□□ -1.86
CCDC9Q9Y3X0 RNU6-1146P-201ENST00000516282 102 ntBASIC3.46□□□□□ -1.86
CCDC9Q9Y3X0 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC9Q9Y3X0 AC010297.1-201ENST00000623948 149 ntBASIC3.46□□□□□ -1.86
CCDC9Q9Y3X0 AC093831.2-201ENST00000624393 3427 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 MIR410-201ENST00000362222 80 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 RNU6-961P-201ENST00000363893 105 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 RNU6-450P-201ENST00000364654 107 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 Y_RNA.338-201ENST00000365320 114 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 RNU6-823P-201ENST00000391042 103 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 RN7SKP58-201ENST00000411010 305 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 AC011406.1-201ENST00000512440 370 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 RNU6-1041P-201ENST00000516254 102 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 RNA5SP282-201ENST00000516355 108 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 AC025647.1-201ENST00000517879 253 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 AC005786.1-201ENST00000588553 154 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 AC005176.2-201ENST00000596933 147 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 AC104695.3-201ENST00000604052 296 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 AL049779.4-201ENST00000604500 156 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 AL162373.1-201ENST00000620433 407 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.45□□□□□ -1.86
CCDC9Q9Y3X0 SNORA63C-201ENST00000364578 129 ntBASIC3.44□□□□□ -1.86
CCDC9Q9Y3X0 RNU6-1240P-201ENST00000365155 104 ntBASIC3.44□□□□□ -1.86
CCDC9Q9Y3X0 Y_RNA.439-201ENST00000384119 94 ntBASIC3.44□□□□□ -1.86
CCDC9Q9Y3X0 Y_RNA.458-201ENST00000384240 102 ntBASIC3.44□□□□□ -1.86
CCDC9Q9Y3X0 Y_RNA.551-201ENST00000384661 102 ntBASIC3.44□□□□□ -1.86
CCDC9Q9Y3X0 AC060773.1-201ENST00000421698 310 ntBASIC3.44□□□□□ -1.86
CCDC9Q9Y3X0 AL356320.1-201ENST00000429616 163 ntBASIC3.44□□□□□ -1.86
CCDC9Q9Y3X0 AC055731.1-201ENST00000474387 401 ntBASIC3.44□□□□□ -1.86
CCDC9Q9Y3X0 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.44□□□□□ -1.86
CCDC9Q9Y3X0 MIR4680-201ENST00000580906 66 ntBASIC3.44□□□□□ -1.86
CCDC9Q9Y3X0 MIR4635-201ENST00000583759 79 ntBASIC3.44□□□□□ -1.86
CCDC9Q9Y3X0 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC9Q9Y3X0 SNORD114-1-201ENST00000362705 72 ntBASIC3.43□□□□□ -1.86
CCDC9Q9Y3X0 Y_RNA.144-201ENST00000363521 113 ntBASIC3.43□□□□□ -1.86
CCDC9Q9Y3X0 Y_RNA.455-201ENST00000384230 98 ntBASIC3.43□□□□□ -1.86
CCDC9Q9Y3X0 RNU6-1160P-201ENST00000384546 104 ntBASIC3.43□□□□□ -1.86
CCDC9Q9Y3X0 RNA5SP450-201ENST00000411206 102 ntBASIC3.43□□□□□ -1.86
CCDC9Q9Y3X0 RPEP5-201ENST00000441137 268 ntBASIC3.43□□□□□ -1.86
CCDC9Q9Y3X0 RN7SKP43-201ENST00000516173 320 ntBASIC3.43□□□□□ -1.86
CCDC9Q9Y3X0 Y_RNA.715-201ENST00000517082 110 ntBASIC3.43□□□□□ -1.86
CCDC9Q9Y3X0 MIR3684-201ENST00000579779 74 ntBASIC3.43□□□□□ -1.86
CCDC9Q9Y3X0 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.43□□□□□ -1.86
CCDC9Q9Y3X0 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.43□□□□□ -1.86
CCDC9Q9Y3X0 Y_RNA.4-201ENST00000362333 112 ntBASIC3.42□□□□□ -1.86
CCDC9Q9Y3X0 RNU6-626P-201ENST00000363354 107 ntBASIC3.42□□□□□ -1.86
CCDC9Q9Y3X0 RNU6-20P-201ENST00000384106 107 ntBASIC3.42□□□□□ -1.86
CCDC9Q9Y3X0 Y_RNA.527-201ENST00000384573 102 ntBASIC3.42□□□□□ -1.86
CCDC9Q9Y3X0 MIR518C-201ENST00000384822 101 ntBASIC3.42□□□□□ -1.86
CCDC9Q9Y3X0 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
CCDC9Q9Y3X0 AL079342.1-201ENST00000401460 267 ntBASIC3.42□□□□□ -1.86
CCDC9Q9Y3X0 HMGN2P34-201ENST00000437647 269 ntBASIC3.42□□□□□ -1.86
CCDC9Q9Y3X0 MTND3P2-201ENST00000438452 342 ntBASIC3.42□□□□□ -1.86
CCDC9Q9Y3X0 AP004217.1-201ENST00000480579 346 ntBASIC3.42□□□□□ -1.86
CCDC9Q9Y3X0 AC107871.2-201ENST00000612894 502 ntBASIC3.42□□□□□ -1.86
CCDC9Q9Y3X0 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC9Q9Y3X0 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC9Q9Y3X0 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC9Q9Y3X0 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC9Q9Y3X0 Y_RNA.380-201ENST00000365663 111 ntBASIC3.41□□□□□ -1.86
CCDC9Q9Y3X0 SNORA11.4-201ENST00000408823 129 ntBASIC3.41□□□□□ -1.86
CCDC9Q9Y3X0 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC9Q9Y3X0 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC9Q9Y3X0 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC9Q9Y3X0 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
CCDC9Q9Y3X0 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.4□□□□□ -1.86
CCDC9Q9Y3X0 Y_RNA.145-201ENST00000363527 102 ntBASIC3.4□□□□□ -1.87
CCDC9Q9Y3X0 RNU1-51P-201ENST00000365345 176 ntBASIC3.4□□□□□ -1.87
CCDC9Q9Y3X0 MIR1252-201ENST00000408861 65 ntBASIC3.4□□□□□ -1.87
CCDC9Q9Y3X0 AC016909.1-201ENST00000415916 166 ntBASIC3.4□□□□□ -1.87
CCDC9Q9Y3X0 MTND2P29-201ENST00000438595 412 ntBASIC3.4□□□□□ -1.87
CCDC9Q9Y3X0 AP002001.1-203ENST00000534002 267 ntBASIC3.4□□□□□ -1.87
CCDC9Q9Y3X0 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC9Q9Y3X0 MIR1273D-201ENST00000577266 86 ntBASIC3.4□□□□□ -1.87
CCDC9Q9Y3X0 AC006380.1-201ENST00000603598 186 ntBASIC3.4□□□□□ -1.87
CCDC9Q9Y3X0 AC004467.1-201ENST00000615678 330 ntBASIC3.4□□□□□ -1.87
CCDC9Q9Y3X0 U1.36-201ENST00000620684 176 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 7.2 ms