Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 MAPK10-372ENST00000641954 3413 ntBASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 Y_RNA.52-201ENST00000362760 96 ntBASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 Y_RNA.309-201ENST00000365046 111 ntBASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 MIR218-1-201ENST00000384999 110 ntBASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 MIR891A-201ENST00000401237 79 ntBASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 RNA5SP39-201ENST00000411245 120 ntBASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 AC025554.1-201ENST00000505641 188 ntBASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 RNA5SP170-201ENST00000517150 101 ntBASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 RNU2-60P-201ENST00000517290 128 ntBASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 AC005000.2-201ENST00000605468 310 ntBASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 U2.20-201ENST00000613956 192 ntBASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 AC002064.3-201ENST00000623448 346 ntBASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 MIR7515-201ENST00000637837 67 ntBASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.06□□□□□ -1.76
LIMD1Q9UGP4 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 MAPK10-322ENST00000641485 4530 ntBASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 AL031121.1-201ENST00000406553 254 ntBASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 RNA5SP306-201ENST00000411087 107 ntBASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 Y_RNA.630-201ENST00000411370 108 ntBASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 NDUFB1P1-201ENST00000435191 180 ntBASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 PHBP14-201ENST00000512887 367 ntBASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 RN7SKP19-201ENST00000516016 252 ntBASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 SNORA48.11-201ENST00000517015 89 ntBASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 AC244505.7-201ENST00000599675 272 ntBASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 AL356280.1-201ENST00000603614 379 ntBASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 UGP2-230ENST00000626380 276 ntTSL 5 BASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
LIMD1Q9UGP4 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 RNU6-1298P-201ENST00000362456 101 ntBASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 Y_RNA.486-201ENST00000384398 107 ntBASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 RNU6-880P-201ENST00000384526 107 ntBASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 RPL23AP48-201ENST00000406913 488 ntBASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 AL513477.1-202ENST00000417061 214 ntBASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 AC018634.1-201ENST00000437554 401 ntBASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 BX510359.1-201ENST00000456973 237 ntBASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 RN7SKP18-201ENST00000516005 275 ntBASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 MIR4298-201ENST00000584380 73 ntBASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 AC007229.1-201ENST00000590455 412 ntBASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
LIMD1Q9UGP4 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 MTND5P32-201ENST00000560711 1802 ntBASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 Y_RNA.66-201ENST00000362862 102 ntBASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 RNU1-96P-201ENST00000364163 162 ntBASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 RNU6-309P-201ENST00000364573 106 ntBASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 Y_RNA.621-201ENST00000411065 96 ntBASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 AF228730.3-201ENST00000436691 102 ntBASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 HMGN1P7-201ENST00000491722 313 ntBASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 AC022695.1-201ENST00000522089 237 ntBASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 PRELID2P1-201ENST00000552837 301 ntBASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 AL022345.2-201ENST00000606307 135 ntBASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIMD1Q9UGP4 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIMD1Q9UGP4 RNU6-1292P-201ENST00000383856 107 ntBASIC4.02□□□□□ -1.77
LIMD1Q9UGP4 RNU6-147P-201ENST00000383983 107 ntBASIC4.02□□□□□ -1.77
LIMD1Q9UGP4 MIR3074-201ENST00000384885 81 ntBASIC4.02□□□□□ -1.77
LIMD1Q9UGP4 RNU6-1328P-201ENST00000410938 106 ntBASIC4.02□□□□□ -1.77
LIMD1Q9UGP4 HMGN2P34-201ENST00000437647 269 ntBASIC4.02□□□□□ -1.77
LIMD1Q9UGP4 RPS26P15-201ENST00000488067 348 ntBASIC4.02□□□□□ -1.77
LIMD1Q9UGP4 RNU7-99P-201ENST00000516271 62 ntBASIC4.02□□□□□ -1.77
LIMD1Q9UGP4 AC007751.1-201ENST00000529260 376 ntBASIC4.02□□□□□ -1.77
LIMD1Q9UGP4 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.02□□□□□ -1.77
LIMD1Q9UGP4 MIR5187-201ENST00000583479 76 ntBASIC4.02□□□□□ -1.77
LIMD1Q9UGP4 MIR7702-201ENST00000621931 59 ntBASIC4.02□□□□□ -1.77
LIMD1Q9UGP4 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.02□□□□□ -1.77
LIMD1Q9UGP4 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.02□□□□□ -1.77
LIMD1Q9UGP4 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 RNU6-743P-201ENST00000364151 106 ntBASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 RNA5SP51-201ENST00000364750 119 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms