Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RNU6-221P-201ENST00000459541 99 ntBASIC2.58□□□□□ -2
VSX1Q9NZR4 AC136628.3-201ENST00000521868 290 ntBASIC2.58□□□□□ -2
VSX1Q9NZR4 AC023043.3-201ENST00000593113 385 ntBASIC2.58□□□□□ -2
VSX1Q9NZR4 DEFB117-201ENST00000602356 141 ntBASIC2.58□□□□□ -2
VSX1Q9NZR4 AC004792.1-201ENST00000614523 137 ntBASIC2.58□□□□□ -2
VSX1Q9NZR4 AC010297.1-201ENST00000623948 149 ntBASIC2.58□□□□□ -2
VSX1Q9NZR4 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.58□□□□□ -2
VSX1Q9NZR4 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.58□□□□□ -2
VSX1Q9NZR4 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.57□□□□□ -2
VSX1Q9NZR4 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.57□□□□□ -2
VSX1Q9NZR4 RNU6-545P-201ENST00000362681 104 ntBASIC2.57□□□□□ -2
VSX1Q9NZR4 RNU6-461P-201ENST00000364195 107 ntBASIC2.57□□□□□ -2
VSX1Q9NZR4 Y_RNA.333-201ENST00000365274 102 ntBASIC2.57□□□□□ -2
VSX1Q9NZR4 RNU6-851P-201ENST00000384565 107 ntBASIC2.57□□□□□ -2
VSX1Q9NZR4 MIR181B1-201ENST00000385240 110 ntBASIC2.57□□□□□ -2
VSX1Q9NZR4 AC003685.2-201ENST00000422795 395 ntBASIC2.57□□□□□ -2
VSX1Q9NZR4 PIGPP3-201ENST00000425307 415 ntBASIC2.57□□□□□ -2
VSX1Q9NZR4 SUMO1P4-201ENST00000429430 302 ntBASIC2.57□□□□□ -2
VSX1Q9NZR4 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.57□□□□□ -2
VSX1Q9NZR4 RPS29P26-201ENST00000477483 171 ntBASIC2.57□□□□□ -2
VSX1Q9NZR4 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.57□□□□□ -2
VSX1Q9NZR4 AC010598.1-201ENST00000510378 103 ntBASIC2.57□□□□□ -2
VSX1Q9NZR4 RN7SKP57-201ENST00000517248 293 ntBASIC2.57□□□□□ -2
VSX1Q9NZR4 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.57□□□□□ -2
VSX1Q9NZR4 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.57□□□□□ -2
VSX1Q9NZR4 CBX3P4-201ENST00000538909 354 ntBASIC2.57□□□□□ -2
VSX1Q9NZR4 FTX_2.1-201ENST00000618816 94 ntBASIC2.57□□□□□ -2
VSX1Q9NZR4 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
VSX1Q9NZR4 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.56□□□□□ -2
VSX1Q9NZR4 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
VSX1Q9NZR4 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
VSX1Q9NZR4 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
VSX1Q9NZR4 Y_RNA.262-201ENST00000364641 102 ntBASIC2.56□□□□□ -2
VSX1Q9NZR4 Y_RNA.274-201ENST00000364714 101 ntBASIC2.56□□□□□ -2
VSX1Q9NZR4 Y_RNA.304-201ENST00000365011 112 ntBASIC2.56□□□□□ -2
VSX1Q9NZR4 RNU6-209P-201ENST00000384118 107 ntBASIC2.56□□□□□ -2
VSX1Q9NZR4 Y_RNA.456-201ENST00000384232 111 ntBASIC2.56□□□□□ -2
VSX1Q9NZR4 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.56□□□□□ -2
VSX1Q9NZR4 snoU13.22-201ENST00000459428 104 ntBASIC2.56□□□□□ -2
VSX1Q9NZR4 AC090515.1-201ENST00000465295 476 ntBASIC2.56□□□□□ -2
VSX1Q9NZR4 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.56□□□□□ -2
VSX1Q9NZR4 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.56□□□□□ -2
VSX1Q9NZR4 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.56□□□□□ -2
VSX1Q9NZR4 RNU6-966P-201ENST00000516479 104 ntBASIC2.56□□□□□ -2
VSX1Q9NZR4 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.56□□□□□ -2
VSX1Q9NZR4 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.56□□□□□ -2
VSX1Q9NZR4 AL355297.2-201ENST00000604792 129 ntBASIC2.56□□□□□ -2
VSX1Q9NZR4 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.56□□□□□ -2
VSX1Q9NZR4 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.56□□□□□ -2
VSX1Q9NZR4 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.56□□□□□ -2
VSX1Q9NZR4 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.56□□□□□ -2
VSX1Q9NZR4 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.55□□□□□ -2
VSX1Q9NZR4 RNU6-1272P-201ENST00000362776 107 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 Y_RNA.368-201ENST00000365547 113 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
VSX1Q9NZR4 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
VSX1Q9NZR4 RNU1-138P-201ENST00000384093 164 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 MIR181A2-201ENST00000384863 110 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.55□□□□□ -2
VSX1Q9NZR4 MIR873-201ENST00000401120 77 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.55□□□□□ -2
VSX1Q9NZR4 AL590004.2-201ENST00000404787 371 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 SNORD88.1-201ENST00000408684 91 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 AC022018.1-201ENST00000430685 241 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.55□□□□□ -2
VSX1Q9NZR4 HMGN2P18-201ENST00000450680 270 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 HSPE1P13-201ENST00000451143 297 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 AL137159.1-201ENST00000452808 512 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 PRELID3BP1-201ENST00000457142 540 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 RNU7-120P-201ENST00000459334 63 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 RNA5SP490-201ENST00000517141 136 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.55□□□□□ -2
VSX1Q9NZR4 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.55□□□□□ -2
VSX1Q9NZR4 MIR5692C2-201ENST00000577959 77 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 MIR3944-201ENST00000581277 108 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 AC072026.1-201ENST00000605023 201 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.55□□□□□ -2
VSX1Q9NZR4 U4atac.1-201ENST00000618345 95 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 MIR8057-201ENST00000620957 69 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.55□□□□□ -2
VSX1Q9NZR4 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.55□□□□□ -2
VSX1Q9NZR4 Z82195.2-201ENST00000612348 18351 ntBASIC2.55□□□□□ -2
VSX1Q9NZR4 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.55□□□□□ -2
VSX1Q9NZR4 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.55□□□□□ -2
VSX1Q9NZR4 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VSX1Q9NZR4 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.54□□□□□ -2
VSX1Q9NZR4 RNU6-1020P-201ENST00000363684 107 ntBASIC2.54□□□□□ -2
VSX1Q9NZR4 Y_RNA.270-201ENST00000364693 104 ntBASIC2.54□□□□□ -2
VSX1Q9NZR4 RNU6-662P-201ENST00000384253 104 ntBASIC2.54□□□□□ -2
VSX1Q9NZR4 SNORA48.5-201ENST00000391143 135 ntBASIC2.54□□□□□ -2
VSX1Q9NZR4 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.54□□□□□ -2
VSX1Q9NZR4 AC092427.1-202ENST00000430569 476 ntBASIC2.54□□□□□ -2
VSX1Q9NZR4 AL357134.1-201ENST00000445848 426 ntBASIC2.54□□□□□ -2
VSX1Q9NZR4 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.54□□□□□ -2
VSX1Q9NZR4 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.54□□□□□ -2
VSX1Q9NZR4 ATP5EP1-201ENST00000510257 156 ntBASIC2.54□□□□□ -2
VSX1Q9NZR4 MIR449C-201ENST00000516047 92 ntBASIC2.54□□□□□ -2
VSX1Q9NZR4 MIR5688-201ENST00000580619 83 ntBASIC2.54□□□□□ -2
VSX1Q9NZR4 MIR3145-201ENST00000580727 82 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 133.3 ms