Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 RNU2-12P-201ENST00000517216 168 ntBASIC2.55□□□□□ -2
ATG4AQ8WYN0 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.55□□□□□ -2
ATG4AQ8WYN0 AC022616.8-201ENST00000533569 253 ntBASIC2.55□□□□□ -2
ATG4AQ8WYN0 GTF3AP2-201ENST00000557014 266 ntBASIC2.55□□□□□ -2
ATG4AQ8WYN0 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.55□□□□□ -2
ATG4AQ8WYN0 MIR3117-201ENST00000584034 78 ntBASIC2.55□□□□□ -2
ATG4AQ8WYN0 AC006380.1-201ENST00000603598 186 ntBASIC2.55□□□□□ -2
ATG4AQ8WYN0 AC135776.4-201ENST00000624300 1904 ntBASIC2.55□□□□□ -2
ATG4AQ8WYN0 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.55□□□□□ -2
ATG4AQ8WYN0 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.55□□□□□ -2
ATG4AQ8WYN0 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.54□□□□□ -2
ATG4AQ8WYN0 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.54□□□□□ -2
ATG4AQ8WYN0 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
ATG4AQ8WYN0 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
ATG4AQ8WYN0 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
ATG4AQ8WYN0 MIR21-201ENST00000362134 72 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 RNU6-545P-201ENST00000362681 104 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 Y_RNA.54-201ENST00000362766 105 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 RNU1-23P-201ENST00000363361 144 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 SNORA80A-201ENST00000363922 136 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 RNA5SP456-201ENST00000364002 114 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 RNU6-514P-201ENST00000384208 107 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 Y_RNA.539-201ENST00000384635 107 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.54□□□□□ -2
ATG4AQ8WYN0 RNU6-907P-201ENST00000390924 102 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 RNU2-32P-201ENST00000411193 191 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 AC003685.2-201ENST00000422795 395 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.54□□□□□ -2
ATG4AQ8WYN0 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.54□□□□□ -2
ATG4AQ8WYN0 MRPS10P1-201ENST00000448483 130 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 RNU6-965P-201ENST00000516721 96 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 RNU6-111P-201ENST00000517179 105 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 ELOCP29-201ENST00000588193 334 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 BX284668.6-201ENST00000606899 438 ntBASIC2.54□□□□□ -2
ATG4AQ8WYN0 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.54□□□□□ -2
ATG4AQ8WYN0 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
ATG4AQ8WYN0 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
ATG4AQ8WYN0 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.53□□□□□ -2
ATG4AQ8WYN0 Y_RNA.44-201ENST00000362676 108 ntBASIC2.53□□□□□ -2
ATG4AQ8WYN0 SNORD31B-201ENST00000364977 69 ntBASIC2.53□□□□□ -2
ATG4AQ8WYN0 MIR627-201ENST00000384979 97 ntBASIC2.53□□□□□ -2
ATG4AQ8WYN0 SNORD58.1-201ENST00000391313 66 ntBASIC2.53□□□□□ -2
ATG4AQ8WYN0 MTCO1P5-201ENST00000433573 344 ntBASIC2.53□□□□□ -2
ATG4AQ8WYN0 AC114982.1-201ENST00000469402 321 ntBASIC2.53□□□□□ -2
ATG4AQ8WYN0 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.53□□□□□ -2
ATG4AQ8WYN0 AC090616.3-201ENST00000582184 217 ntBASIC2.53□□□□□ -2
ATG4AQ8WYN0 MIR4753-201ENST00000585119 83 ntBASIC2.53□□□□□ -2
ATG4AQ8WYN0 MIR1248-201ENST00000629190 106 ntBASIC2.53□□□□□ -2
ATG4AQ8WYN0 AC007336.1-201ENST00000576365 3828 ntBASIC2.53□□□□□ -2
ATG4AQ8WYN0 SNORA5B-201ENST00000363786 132 ntBASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 Y_RNA.277-201ENST00000364754 102 ntBASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 RNU1-109P-201ENST00000383960 147 ntBASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 Y_RNA.515-201ENST00000384535 112 ntBASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 MIR518C-201ENST00000384822 101 ntBASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 HMGN2P35-201ENST00000412164 270 ntBASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 AC074290.1-201ENST00000448883 135 ntBASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 AC016925.1-201ENST00000458303 298 ntBASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 AL355297.2-201ENST00000604792 129 ntBASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 MIR6852-201ENST00000621699 66 ntBASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
ATG4AQ8WYN0 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.51□□□□□ -2.01
ATG4AQ8WYN0 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.51□□□□□ -2.01
ATG4AQ8WYN0 MIR27B-201ENST00000385129 97 ntBASIC2.51□□□□□ -2.01
ATG4AQ8WYN0 AL357139.1-201ENST00000407792 426 ntBASIC2.51□□□□□ -2.01
ATG4AQ8WYN0 MIR1185-2-201ENST00000408687 86 ntBASIC2.51□□□□□ -2.01
ATG4AQ8WYN0 AL445687.1-201ENST00000439946 251 ntBASIC2.51□□□□□ -2.01
ATG4AQ8WYN0 AL139109.1-201ENST00000455491 297 ntBASIC2.51□□□□□ -2.01
ATG4AQ8WYN0 AC091959.1-201ENST00000495857 238 ntBASIC2.51□□□□□ -2.01
ATG4AQ8WYN0 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.51□□□□□ -2.01
ATG4AQ8WYN0 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.51□□□□□ -2.01
ATG4AQ8WYN0 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.51□□□□□ -2.01
ATG4AQ8WYN0 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 SNORD115-30-201ENST00000364117 82 ntBASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 RNA5SP125-201ENST00000364843 120 ntBASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 RNU6-338P-201ENST00000383888 105 ntBASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 RNU6-975P-201ENST00000384296 105 ntBASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 Y_RNA.510-201ENST00000384511 114 ntBASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 U3.40-201ENST00000408706 208 ntBASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 Z96811.1-201ENST00000445880 108 ntBASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 RNU7-57P-201ENST00000459540 60 ntBASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 RNA5SP490-201ENST00000517141 136 ntBASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 RNA5SP402-201ENST00000517148 110 ntBASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 MIR4319-201ENST00000577285 85 ntBASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.5□□□□□ -2.01
ATG4AQ8WYN0 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.49□□□□□ -2.01
ATG4AQ8WYN0 UBE2WP1-201ENST00000362030 340 ntBASIC2.49□□□□□ -2.01
ATG4AQ8WYN0 RNU4-80P-201ENST00000363200 141 ntBASIC2.49□□□□□ -2.01
ATG4AQ8WYN0 RNY1-201ENST00000364228 113 ntBASIC2.49□□□□□ -2.01
ATG4AQ8WYN0 Y_RNA.243-201ENST00000364481 109 ntBASIC2.49□□□□□ -2.01
ATG4AQ8WYN0 Y_RNA.275-201ENST00000364726 110 ntBASIC2.49□□□□□ -2.01
ATG4AQ8WYN0 RNU6-438P-201ENST00000365561 103 ntBASIC2.49□□□□□ -2.01
ATG4AQ8WYN0 Y_RNA.500-201ENST00000384466 111 ntBASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms