Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL4A3Q01955 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
COL4A3Q01955 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
COL4A3Q01955 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL4A3Q01955 Y_RNA.215-201ENST00000364204 112 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 Y_RNA.568-201ENST00000384742 113 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 AL162725.1-201ENST00000435405 301 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 SEPT7P4-201ENST00000437076 306 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 AC091179.1-201ENST00000461606 579 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 RPL31P41-201ENST00000477967 372 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 Y_RNA.797-201ENST00000515977 94 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 MIR4744-201ENST00000581563 82 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.76□□□□□ -1.97
COL4A3Q01955 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.76□□□□□ -1.97
COL4A3Q01955 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC2.76□□□□□ -1.97
COL4A3Q01955 AL078604.3-201ENST00000615580 211 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 AC002076.2-201ENST00000617362 122 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 Xist_exon1.1-201ENST00000618930 85 ntBASIC2.76□□□□□ -1.97
COL4A3Q01955 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.76□□□□□ -1.97
COL4A3Q01955 AC010889.1-201ENST00000566193 2666 ntBASIC2.75□□□□□ -1.97
COL4A3Q01955 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
COL4A3Q01955 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.75□□□□□ -1.97
COL4A3Q01955 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL4A3Q01955 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC2.75□□□□□ -1.97
COL4A3Q01955 RNU6-1010P-201ENST00000362757 107 ntBASIC2.75□□□□□ -1.97
COL4A3Q01955 U3.9-201ENST00000363823 204 ntBASIC2.75□□□□□ -1.97
COL4A3Q01955 RNU4-17P-201ENST00000365598 141 ntBASIC2.75□□□□□ -1.97
COL4A3Q01955 RNU6-1027P-201ENST00000383998 107 ntBASIC2.75□□□□□ -1.97
COL4A3Q01955 RNA5SP239-201ENST00000410218 129 ntBASIC2.75□□□□□ -1.97
COL4A3Q01955 RNU6-710P-201ENST00000410424 105 ntBASIC2.75□□□□□ -1.97
COL4A3Q01955 RN7SKP223-201ENST00000410582 62 ntBASIC2.75□□□□□ -1.97
COL4A3Q01955 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.75□□□□□ -1.97
COL4A3Q01955 AIMP1P2-201ENST00000425294 312 ntBASIC2.75□□□□□ -1.97
COL4A3Q01955 AC004386.2-201ENST00000441858 148 ntBASIC2.75□□□□□ -1.97
COL4A3Q01955 snoU13.14-201ENST00000459372 104 ntBASIC2.75□□□□□ -1.97
COL4A3Q01955 RPL30P14-201ENST00000482744 348 ntBASIC2.75□□□□□ -1.97
COL4A3Q01955 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.75□□□□□ -1.97
COL4A3Q01955 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.75□□□□□ -1.97
COL4A3Q01955 AL138880.2-201ENST00000616214 239 ntBASIC2.75□□□□□ -1.97
COL4A3Q01955 AC013791.1-201ENST00000616619 62 ntBASIC2.75□□□□□ -1.97
COL4A3Q01955 AC068205.3-201ENST00000636385 468 ntBASIC2.75□□□□□ -1.97
COL4A3Q01955 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
COL4A3Q01955 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC2.74□□□□□ -1.97
COL4A3Q01955 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC2.74□□□□□ -1.97
COL4A3Q01955 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
COL4A3Q01955 MIR26A1-201ENST00000362205 77 ntBASIC2.74□□□□□ -1.97
COL4A3Q01955 RNU4-15P-201ENST00000362613 141 ntBASIC2.74□□□□□ -1.97
COL4A3Q01955 RNU6-1290P-201ENST00000362957 109 ntBASIC2.74□□□□□ -1.97
COL4A3Q01955 RNU6-151P-201ENST00000364158 107 ntBASIC2.74□□□□□ -1.97
COL4A3Q01955 SNORD87-201ENST00000364849 89 ntBASIC2.74□□□□□ -1.97
COL4A3Q01955 Y_RNA.540-201ENST00000384638 111 ntBASIC2.74□□□□□ -1.97
COL4A3Q01955 MIR518C-201ENST00000384822 101 ntBASIC2.74□□□□□ -1.97
COL4A3Q01955 RNU6-239P-201ENST00000390990 99 ntBASIC2.74□□□□□ -1.97
COL4A3Q01955 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.74□□□□□ -1.97
COL4A3Q01955 SNORD11B-201ENST00000607707 90 ntBASIC2.74□□□□□ -1.97
COL4A3Q01955 AC010329.5-201ENST00000623497 2174 ntBASIC2.74□□□□□ -1.97
COL4A3Q01955 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
COL4A3Q01955 WWP1P1-201ENST00000466609 2769 ntBASIC2.74□□□□□ -1.97
COL4A3Q01955 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
COL4A3Q01955 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
COL4A3Q01955 Y_RNA.243-201ENST00000364481 109 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL4A3Q01955 RNU6-1264P-201ENST00000383891 107 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 AL159169.1-201ENST00000421119 127 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 CR769767.1-201ENST00000436337 346 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 AC010099.1-201ENST00000455434 375 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.73□□□□□ -1.97
COL4A3Q01955 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.73□□□□□ -1.97
COL4A3Q01955 RN7SKP282-201ENST00000516824 299 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.73□□□□□ -1.97
COL4A3Q01955 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.73□□□□□ -1.97
COL4A3Q01955 MIR4635-201ENST00000583759 79 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 Y_RNA.778-201ENST00000620203 90 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
COL4A3Q01955 AC134026.1-201ENST00000623249 2239 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL4A3Q01955 Y_RNA.293-201ENST00000364908 93 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 RNU6-198P-201ENST00000384258 104 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 RNU6-417P-201ENST00000384712 107 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 MIR626-201ENST00000385032 94 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 MIR518E-201ENST00000385252 88 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 RNU6-1154P-201ENST00000391001 104 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 RNU2-37P-201ENST00000410695 177 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 EBAG9P1-201ENST00000418955 543 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 RNU7-23P-201ENST00000459465 62 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 AC022616.8-201ENST00000533569 253 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.73□□□□□ -1.97
COL4A3Q01955 MIR4431-201ENST00000579990 94 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 MIR8070-201ENST00000616510 88 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 AC005562.2-201ENST00000618264 111 ntBASIC2.73□□□□□ -1.97
COL4A3Q01955 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
COL4A3Q01955 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
COL4A3Q01955 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
COL4A3Q01955 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.72□□□□□ -1.97
COL4A3Q01955 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL4A3Q01955 AC008264.2-201ENST00000610193 3731 ntBASIC2.72□□□□□ -1.97
COL4A3Q01955 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL4A3Q01955 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL4A3Q01955 SNORA18.2-201ENST00000383865 132 ntBASIC2.72□□□□□ -1.97
COL4A3Q01955 SNORA8.3-201ENST00000384679 139 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms