Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 SNORA26.5-201ENST00000391215 123 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 AL031003.1-201ENST00000404229 172 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 AC104332.2-201ENST00000429959 156 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 AL513328.1-201ENST00000446460 224 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 AC146507.2-201ENST00000460608 476 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 RNU1-41P-201ENST00000516161 162 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 RNU1-48P-201ENST00000516400 162 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 SNORA64.4-201ENST00000516632 81 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 AC079598.5-201ENST00000547460 117 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 AC091544.4-201ENST00000555268 342 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 MIR4435-1-201ENST00000582552 80 ntBASIC3.14□□□□□ -1.91
NKX3-2P78367 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
NKX3-2P78367 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.13□□□□□ -1.91
NKX3-2P78367 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
NKX3-2P78367 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.13□□□□□ -1.91
NKX3-2P78367 Y_RNA.7-201ENST00000362352 102 ntBASIC3.13□□□□□ -1.91
NKX3-2P78367 Y_RNA.272-201ENST00000364696 102 ntBASIC3.13□□□□□ -1.91
NKX3-2P78367 Y_RNA.291-201ENST00000364886 113 ntBASIC3.13□□□□□ -1.91
NKX3-2P78367 SNORD116-18-201ENST00000383961 92 ntBASIC3.13□□□□□ -1.91
NKX3-2P78367 Y_RNA.412-201ENST00000384001 104 ntBASIC3.13□□□□□ -1.91
NKX3-2P78367 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.13□□□□□ -1.91
NKX3-2P78367 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.13□□□□□ -1.91
NKX3-2P78367 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC3.13□□□□□ -1.91
NKX3-2P78367 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.13□□□□□ -1.91
NKX3-2P78367 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.12□□□□□ -1.91
NKX3-2P78367 SNORD56.3-201ENST00000363507 71 ntBASIC3.12□□□□□ -1.91
NKX3-2P78367 RNU6-1048P-201ENST00000364054 107 ntBASIC3.12□□□□□ -1.91
NKX3-2P78367 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-2P78367 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-2P78367 Z98742.2-201ENST00000431564 187 ntBASIC3.12□□□□□ -1.91
NKX3-2P78367 RN7SL633P-201ENST00000488974 297 ntBASIC3.12□□□□□ -1.91
NKX3-2P78367 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
NKX3-2P78367 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.12□□□□□ -1.91
NKX3-2P78367 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-2P78367 AC134026.1-201ENST00000623249 2239 ntBASIC3.11□□□□□ -1.91
NKX3-2P78367 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
NKX3-2P78367 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
NKX3-2P78367 RNA5SP68-201ENST00000363885 119 ntBASIC3.11□□□□□ -1.91
NKX3-2P78367 Y_RNA.243-201ENST00000364481 109 ntBASIC3.11□□□□□ -1.91
NKX3-2P78367 SNORD50.2-201ENST00000365465 70 ntBASIC3.11□□□□□ -1.91
NKX3-2P78367 RNU4-17P-201ENST00000365598 141 ntBASIC3.11□□□□□ -1.91
NKX3-2P78367 CD24P4-201ENST00000382840 243 ntBASIC3.11□□□□□ -1.91
NKX3-2P78367 MIR196B-201ENST00000384852 84 ntBASIC3.11□□□□□ -1.91
NKX3-2P78367 MIR548B-201ENST00000385247 97 ntBASIC3.11□□□□□ -1.91
NKX3-2P78367 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.11□□□□□ -1.91
NKX3-2P78367 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.11□□□□□ -1.91
NKX3-2P78367 AC136628.3-201ENST00000521868 290 ntBASIC3.11□□□□□ -1.91
NKX3-2P78367 AC100767.1-201ENST00000528178 123 ntBASIC3.11□□□□□ -1.91
NKX3-2P78367 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC3.11□□□□□ -1.91
NKX3-2P78367 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.11□□□□□ -1.91
NKX3-2P78367 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
NKX3-2P78367 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
NKX3-2P78367 AC026241.1-201ENST00000517873 2142 ntBASIC3.1□□□□□ -1.91
NKX3-2P78367 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.1□□□□□ -1.91
NKX3-2P78367 Y_RNA.182-201ENST00000363880 111 ntBASIC3.1□□□□□ -1.91
NKX3-2P78367 RNU4-10P-201ENST00000364383 140 ntBASIC3.1□□□□□ -1.91
NKX3-2P78367 Y_RNA.580-201ENST00000391004 95 ntBASIC3.1□□□□□ -1.91
NKX3-2P78367 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.1□□□□□ -1.91
NKX3-2P78367 AL121890.1-201ENST00000435457 205 ntBASIC3.1□□□□□ -1.91
NKX3-2P78367 SEPT7P4-201ENST00000437076 306 ntBASIC3.1□□□□□ -1.91
NKX3-2P78367 EEF1B2P7-201ENST00000451177 676 ntBASIC3.1□□□□□ -1.91
NKX3-2P78367 AC104984.5-201ENST00000586878 94 ntBASIC3.1□□□□□ -1.91
NKX3-2P78367 uc_338.14-201ENST00000613162 166 ntBASIC3.1□□□□□ -1.91
NKX3-2P78367 AL590808.1-201ENST00000618696 141 ntBASIC3.1□□□□□ -1.91
NKX3-2P78367 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
NKX3-2P78367 AC008264.2-201ENST00000610193 3731 ntBASIC3.1□□□□□ -1.91
NKX3-2P78367 AC010329.5-201ENST00000623497 2174 ntBASIC3.1□□□□□ -1.91
NKX3-2P78367 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
NKX3-2P78367 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
NKX3-2P78367 SNORA14A-201ENST00000364773 135 ntBASIC3.09□□□□□ -1.91
NKX3-2P78367 RNU6-818P-201ENST00000364837 108 ntBASIC3.09□□□□□ -1.91
NKX3-2P78367 SNORA40.19-201ENST00000390846 128 ntBASIC3.09□□□□□ -1.91
NKX3-2P78367 TOMM22P2-201ENST00000430735 237 ntBASIC3.09□□□□□ -1.91
NKX3-2P78367 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.09□□□□□ -1.91
NKX3-2P78367 RPS29P12-201ENST00000460178 152 ntBASIC3.09□□□□□ -1.91
NKX3-2P78367 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC3.09□□□□□ -1.91
NKX3-2P78367 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.09□□□□□ -1.91
NKX3-2P78367 AC245166.1-201ENST00000521012 253 ntBASIC3.09□□□□□ -1.91
NKX3-2P78367 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.09□□□□□ -1.91
NKX3-2P78367 AP001485.1-201ENST00000604799 199 ntBASIC3.09□□□□□ -1.91
NKX3-2P78367 AL078604.3-201ENST00000615580 211 ntBASIC3.09□□□□□ -1.91
NKX3-2P78367 MIR6817-201ENST00000615588 66 ntBASIC3.09□□□□□ -1.91
NKX3-2P78367 AC013791.1-201ENST00000616619 62 ntBASIC3.09□□□□□ -1.91
NKX3-2P78367 U6.115-201ENST00000636045 103 ntBASIC3.09□□□□□ -1.91
NKX3-2P78367 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.09□□□□□ -1.91
NKX3-2P78367 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
NKX3-2P78367 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
NKX3-2P78367 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
NKX3-2P78367 U3.8-201ENST00000363675 217 ntBASIC3.08□□□□□ -1.92
NKX3-2P78367 RNU6-312P-201ENST00000364629 107 ntBASIC3.08□□□□□ -1.92
NKX3-2P78367 RNU6-81P-201ENST00000365608 104 ntBASIC3.08□□□□□ -1.92
NKX3-2P78367 Y_RNA.572-201ENST00000384757 98 ntBASIC3.08□□□□□ -1.92
NKX3-2P78367 SNORA46-201ENST00000384762 135 ntBASIC3.08□□□□□ -1.92
NKX3-2P78367 RNU6-381P-201ENST00000391259 108 ntBASIC3.08□□□□□ -1.92
NKX3-2P78367 BMS1P22-201ENST00000414726 313 ntBASIC3.08□□□□□ -1.92
NKX3-2P78367 AC097463.2-201ENST00000421074 142 ntBASIC3.08□□□□□ -1.92
NKX3-2P78367 EIF4EP4-201ENST00000424916 578 ntBASIC3.08□□□□□ -1.92
NKX3-2P78367 AC009414.1-201ENST00000427200 443 ntBASIC3.08□□□□□ -1.92
NKX3-2P78367 RPS27AP9-201ENST00000477681 438 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 137 ms