Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RNU6-823P-201ENST00000391042 103 ntBASIC2.25□□□□□ -2.05
HDAC4P56524 SNORA48.3-201ENST00000391081 134 ntBASIC2.25□□□□□ -2.05
HDAC4P56524 AL590004.1-201ENST00000405321 300 ntBASIC2.25□□□□□ -2.05
HDAC4P56524 PRELID3BP1-201ENST00000457142 540 ntBASIC2.25□□□□□ -2.05
HDAC4P56524 RNA5SP233-201ENST00000459153 113 ntBASIC2.25□□□□□ -2.05
HDAC4P56524 RNU6-1012P-201ENST00000516606 109 ntBASIC2.25□□□□□ -2.05
HDAC4P56524 RNU6-344P-201ENST00000516635 111 ntBASIC2.25□□□□□ -2.05
HDAC4P56524 RN7SKP49-201ENST00000516675 260 ntBASIC2.25□□□□□ -2.05
HDAC4P56524 AC091144.1-201ENST00000519573 138 ntBASIC2.25□□□□□ -2.05
HDAC4P56524 HSBP1P1-201ENST00000555205 166 ntBASIC2.25□□□□□ -2.05
HDAC4P56524 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.25□□□□□ -2.05
HDAC4P56524 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.25□□□□□ -2.05
HDAC4P56524 MIR1273D-201ENST00000577266 86 ntBASIC2.25□□□□□ -2.05
HDAC4P56524 MIR5002-201ENST00000584713 97 ntBASIC2.25□□□□□ -2.05
HDAC4P56524 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.25□□□□□ -2.05
HDAC4P56524 AC091932.3-201ENST00000624223 323 ntBASIC2.25□□□□□ -2.05
HDAC4P56524 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.25□□□□□ -2.05
HDAC4P56524 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.24□□□□□ -2.05
HDAC4P56524 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
HDAC4P56524 MIR340-201ENST00000362125 95 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 Y_RNA.27-201ENST00000362540 103 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 RNU1-62P-201ENST00000362599 164 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 RNU6-545P-201ENST00000362681 104 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 SNORD114-1-201ENST00000362705 72 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 SNORD115-3-201ENST00000363100 82 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 RNU6-727P-201ENST00000363592 107 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 Y_RNA.415-201ENST00000384012 112 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 RNU6-738P-201ENST00000384531 106 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 MIR606-201ENST00000384851 96 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 HMGN2P39-201ENST00000398005 273 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 AC245102.2-201ENST00000448956 180 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.24□□□□□ -2.05
HDAC4P56524 HMGN2P18-201ENST00000450680 270 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 AC055731.1-201ENST00000474387 401 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 RPL26P26-201ENST00000480251 434 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.24□□□□□ -2.05
HDAC4P56524 AC093259.1-201ENST00000509755 300 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 RNU2-19P-201ENST00000517288 84 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 AC040926.1-201ENST00000530195 238 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 RRN3P3-201ENST00000549207 578 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 PART1_1.1-201ENST00000611761 217 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 DLEU2_2.2-201ENST00000615474 90 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 AL162373.1-201ENST00000620433 407 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 MIR6132-201ENST00000622083 109 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 MTND5P35-201ENST00000557537 1720 ntBASIC2.24□□□□□ -2.05
HDAC4P56524 Y_RNA.153-201ENST00000363615 91 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 Y_RNA.179-201ENST00000363844 90 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 SNORD87-201ENST00000364849 89 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 SNORD31B-201ENST00000364977 69 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 RNU6-438P-201ENST00000365561 103 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 RNU6-639P-201ENST00000384074 107 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 RNU6-793P-201ENST00000384233 104 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 RNU6-1160P-201ENST00000384546 104 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 MIR17-201ENST00000385012 84 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 MIR628-201ENST00000385229 95 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 RNU6-985P-201ENST00000410182 104 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 SNORD12B-201ENST00000410433 91 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 RNU6-130P-201ENST00000411112 103 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 ELOCP21-201ENST00000412558 336 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.23□□□□□ -2.05
HDAC4P56524 AC007395.1-201ENST00000451333 677 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 U8.20-201ENST00000459445 131 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 AC093852.1-201ENST00000503587 266 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 AC023442.1-201ENST00000531247 422 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 AC113195.1-201ENST00000579952 141 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 AL360085.1-201ENST00000604713 532 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 SNORD11B-201ENST00000607707 90 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 AL021879.1-201ENST00000611756 288 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.23□□□□□ -2.05
HDAC4P56524 AL138825.1-201ENST00000618587 192 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 AC008873.1-201ENST00000625051 138 ntBASIC2.23□□□□□ -2.05
HDAC4P56524 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.23□□□□□ -2.05
HDAC4P56524 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
HDAC4P56524 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.22□□□□□ -2.05
HDAC4P56524 SNORD14.1-201ENST00000365609 90 ntBASIC2.22□□□□□ -2.05
HDAC4P56524 Y_RNA.458-201ENST00000384240 102 ntBASIC2.22□□□□□ -2.05
HDAC4P56524 MIR300-201ENST00000401138 83 ntBASIC2.22□□□□□ -2.05
HDAC4P56524 AL033519.2-201ENST00000403958 392 ntBASIC2.22□□□□□ -2.05
HDAC4P56524 MIR1262-201ENST00000408276 93 ntBASIC2.22□□□□□ -2.05
HDAC4P56524 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
HDAC4P56524 AC016925.1-201ENST00000458303 298 ntBASIC2.22□□□□□ -2.05
HDAC4P56524 RPL23AP42-201ENST00000471152 471 ntBASIC2.22□□□□□ -2.05
HDAC4P56524 HMGN2P9-201ENST00000476875 229 ntBASIC2.22□□□□□ -2.05
HDAC4P56524 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.22□□□□□ -2.05
HDAC4P56524 Y_RNA.683-201ENST00000516508 93 ntBASIC2.22□□□□□ -2.05
HDAC4P56524 AP002001.1-203ENST00000534002 267 ntBASIC2.22□□□□□ -2.05
HDAC4P56524 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC2.22□□□□□ -2.05
HDAC4P56524 AC011476.5-201ENST00000615594 130 ntBASIC2.22□□□□□ -2.05
HDAC4P56524 SDR42E1P4-201ENST00000620894 481 ntBASIC2.22□□□□□ -2.05
HDAC4P56524 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.22□□□□□ -2.05
HDAC4P56524 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
HDAC4P56524 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
HDAC4P56524 Y_RNA.4-201ENST00000362333 112 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 Y_RNA.99-201ENST00000363138 105 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 RNU6-961P-201ENST00000363893 105 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 SNORA16B-201ENST00000364674 135 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 Y_RNA.338-201ENST00000365320 114 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 AC117470.1-201ENST00000381974 330 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 SNORD14D-201ENST00000384390 87 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 MIR29C-201ENST00000385231 88 ntBASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 127.8 ms