Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.49□□□□□ -1.85
COL8A1P27658 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.49□□□□□ -1.85
COL8A1P27658 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
COL8A1P27658 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.49□□□□□ -1.85
COL8A1P27658 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL8A1P27658 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL8A1P27658 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.49□□□□□ -1.85
COL8A1P27658 AC009487.4-201ENST00000624969 3585 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL8A1P27658 snoU2_19.1-201ENST00000362361 80 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 SNORD32B-201ENST00000364460 84 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 RNU1-44P-201ENST00000384453 163 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 Y_RNA.507-201ENST00000384500 99 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 SNORD66.1-201ENST00000391230 76 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 RNU6-57P-201ENST00000411348 103 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 AL139247.1-201ENST00000422768 325 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 VDAC1P3-201ENST00000434069 851 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 RNU2-11P-201ENST00000459191 187 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 RPS27P22-201ENST00000478056 241 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 RNU7-123P-201ENST00000515911 60 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 RNU6-928P-201ENST00000516876 104 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 AC068657.1-201ENST00000520807 306 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL8A1P27658 MIR8058-201ENST00000615737 89 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 FAS-AS1.2-201ENST00000620386 170 ntBASIC3.49□□□□□ -1.85
COL8A1P27658 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL8A1P27658 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL8A1P27658 AC010680.1-201ENST00000590024 3590 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
COL8A1P27658 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
COL8A1P27658 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
COL8A1P27658 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.48□□□□□ -1.85
COL8A1P27658 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.48□□□□□ -1.85
COL8A1P27658 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
COL8A1P27658 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.48□□□□□ -1.85
COL8A1P27658 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL8A1P27658 RNU6-418P-201ENST00000384035 107 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 MIR3074-201ENST00000384885 81 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 RNA5SP239-201ENST00000410218 129 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 MIR1911-201ENST00000410783 80 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 RNA5SP104-201ENST00000410989 118 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 BTF3P4-201ENST00000418852 495 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 SNRPGP10-201ENST00000432323 225 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 SNRPGP13-201ENST00000442212 177 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 AC025445.1-201ENST00000502728 300 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC3.48□□□□□ -1.85
COL8A1P27658 Y_RNA.666-201ENST00000516187 112 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 IGLV3-26-201ENST00000520756 302 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 AC004486.1-201ENST00000546846 233 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.48□□□□□ -1.85
COL8A1P27658 AC022523.2-201ENST00000561045 150 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 AC025627.2-201ENST00000576220 160 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 MIR5684-201ENST00000585074 65 ntBASIC3.48□□□□□ -1.85
COL8A1P27658 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.48□□□□□ -1.85
COL8A1P27658 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL8A1P27658 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
COL8A1P27658 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.48□□□□□ -1.85
COL8A1P27658 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.48□□□□□ -1.85
COL8A1P27658 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.47□□□□□ -1.85
COL8A1P27658 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.47□□□□□ -1.85
COL8A1P27658 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL8A1P27658 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL8A1P27658 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL8A1P27658 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.47□□□□□ -1.85
COL8A1P27658 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
COL8A1P27658 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.47□□□□□ -1.85
COL8A1P27658 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
COL8A1P27658 RNA5SP307-201ENST00000362863 116 ntBASIC3.47□□□□□ -1.85
COL8A1P27658 RNU6-832P-201ENST00000363319 107 ntBASIC3.47□□□□□ -1.85
COL8A1P27658 RNU1-22P-201ENST00000363334 158 ntBASIC3.47□□□□□ -1.85
COL8A1P27658 Y_RNA.242-201ENST00000364473 110 ntBASIC3.47□□□□□ -1.85
COL8A1P27658 Y_RNA.454-201ENST00000384224 113 ntBASIC3.47□□□□□ -1.85
COL8A1P27658 Y_RNA.531-201ENST00000384589 121 ntBASIC3.47□□□□□ -1.85
COL8A1P27658 MIR124-3-201ENST00000384866 87 ntBASIC3.47□□□□□ -1.85
COL8A1P27658 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.47□□□□□ -1.85
COL8A1P27658 AC084357.1-201ENST00000473404 255 ntBASIC3.47□□□□□ -1.85
COL8A1P27658 MIR3117-201ENST00000584034 78 ntBASIC3.47□□□□□ -1.85
COL8A1P27658 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.47□□□□□ -1.85
COL8A1P27658 MFSD8-236ENST00000641509 4050 ntBASIC3.47□□□□□ -1.85
COL8A1P27658 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
COL8A1P27658 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL8A1P27658 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.47□□□□□ -1.85
COL8A1P27658 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL8A1P27658 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.47□□□□□ -1.85
COL8A1P27658 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
COL8A1P27658 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.46□□□□□ -1.86
COL8A1P27658 RNU1-72P-201ENST00000362976 153 ntBASIC3.46□□□□□ -1.86
COL8A1P27658 Y_RNA.190-201ENST00000363964 101 ntBASIC3.46□□□□□ -1.86
COL8A1P27658 SNORA7.2-201ENST00000364446 145 ntBASIC3.46□□□□□ -1.86
COL8A1P27658 Y_RNA.410-201ENST00000383992 113 ntBASIC3.46□□□□□ -1.86
COL8A1P27658 RNU1-57P-201ENST00000384491 166 ntBASIC3.46□□□□□ -1.86
COL8A1P27658 MIR518F-201ENST00000384973 87 ntBASIC3.46□□□□□ -1.86
COL8A1P27658 AC009238.1-201ENST00000442165 424 ntBASIC3.46□□□□□ -1.86
COL8A1P27658 AC009237.6-201ENST00000446969 424 ntBASIC3.46□□□□□ -1.86
COL8A1P27658 SNORD108-201ENST00000459332 71 ntBASIC3.46□□□□□ -1.86
COL8A1P27658 RNU7-6P-201ENST00000516845 62 ntBASIC3.46□□□□□ -1.86
COL8A1P27658 SCARNA14-201ENST00000516903 136 ntBASIC3.46□□□□□ -1.86
COL8A1P27658 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.46□□□□□ -1.86
COL8A1P27658 AC069240.1-201ENST00000548774 375 ntBASIC3.46□□□□□ -1.86
COL8A1P27658 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms