Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC124312.5-201ENST00000604451 268 ntBASIC2□□□□□ -2.09
MSH3P20585 SNORD11B-201ENST00000607707 90 ntBASIC2□□□□□ -2.09
MSH3P20585 RN7SL853P-201ENST00000617250 223 ntBASIC2□□□□□ -2.09
MSH3P20585 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2□□□□□ -2.09
MSH3P20585 AC068205.3-201ENST00000636385 468 ntBASIC2□□□□□ -2.09
MSH3P20585 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2□□□□□ -2.09
MSH3P20585 RNU6-545P-201ENST00000362681 104 ntBASIC1.99□□□□□ -2.09
MSH3P20585 Y_RNA.162-201ENST00000363683 102 ntBASIC1.99□□□□□ -2.09
MSH3P20585 RNU4-50P-201ENST00000364361 141 ntBASIC1.99□□□□□ -2.09
MSH3P20585 RNU6-450P-201ENST00000364654 107 ntBASIC1.99□□□□□ -2.09
MSH3P20585 RNA5SP160-201ENST00000364866 120 ntBASIC1.99□□□□□ -2.09
MSH3P20585 Y_RNA.415-201ENST00000384012 112 ntBASIC1.99□□□□□ -2.09
MSH3P20585 MIR17-201ENST00000385012 84 ntBASIC1.99□□□□□ -2.09
MSH3P20585 SNORD78.2-201ENST00000391076 69 ntBASIC1.99□□□□□ -2.09
MSH3P20585 MIR300-201ENST00000401138 83 ntBASIC1.99□□□□□ -2.09
MSH3P20585 AL357139.1-201ENST00000407792 426 ntBASIC1.99□□□□□ -2.09
MSH3P20585 RNU6-101P-201ENST00000410323 104 ntBASIC1.99□□□□□ -2.09
MSH3P20585 AL139156.1-201ENST00000412785 841 ntBASIC1.99□□□□□ -2.09
MSH3P20585 OOSP1P1-201ENST00000423265 274 ntBASIC1.99□□□□□ -2.09
MSH3P20585 SDAD1P3-201ENST00000427380 333 ntBASIC1.99□□□□□ -2.09
MSH3P20585 SNORA4.4-201ENST00000515921 135 ntBASIC1.99□□□□□ -2.09
MSH3P20585 RNA5SP490-201ENST00000517141 136 ntBASIC1.99□□□□□ -2.09
MSH3P20585 SNORA31.25-201ENST00000517242 134 ntBASIC1.99□□□□□ -2.09
MSH3P20585 AK6P2-201ENST00000549020 471 ntBASIC1.99□□□□□ -2.09
MSH3P20585 AC233702.2-202ENST00000562547 291 ntBASIC1.99□□□□□ -2.09
MSH3P20585 AC113195.1-201ENST00000579952 141 ntBASIC1.99□□□□□ -2.09
MSH3P20585 AL390123.1-201ENST00000603216 237 ntBASIC1.99□□□□□ -2.09
MSH3P20585 AL121655.1-201ENST00000605811 308 ntBASIC1.99□□□□□ -2.09
MSH3P20585 AC022202.1-201ENST00000613515 211 ntBASIC1.99□□□□□ -2.09
MSH3P20585 AC240442.1-201ENST00000616055 283 ntBASIC1.99□□□□□ -2.09
MSH3P20585 AC010205.1-201ENST00000616668 449 ntBASIC1.99□□□□□ -2.09
MSH3P20585 AC008873.1-201ENST00000625051 138 ntBASIC1.99□□□□□ -2.09
MSH3P20585 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.99□□□□□ -2.09
MSH3P20585 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
MSH3P20585 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
MSH3P20585 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
MSH3P20585 CENPCP1-201ENST00000533085 2578 ntBASIC1.98□□□□□ -2.09
MSH3P20585 SNORA16B-201ENST00000364674 135 ntBASIC1.98□□□□□ -2.09
MSH3P20585 SNORD87-201ENST00000364849 89 ntBASIC1.98□□□□□ -2.09
MSH3P20585 SNORA63.7-201ENST00000365579 123 ntBASIC1.98□□□□□ -2.09
MSH3P20585 Y_RNA.380-201ENST00000365663 111 ntBASIC1.98□□□□□ -2.09
MSH3P20585 Y_RNA.458-201ENST00000384240 102 ntBASIC1.98□□□□□ -2.09
MSH3P20585 Y_RNA.551-201ENST00000384661 102 ntBASIC1.98□□□□□ -2.09
MSH3P20585 MIR586-201ENST00000385035 97 ntBASIC1.98□□□□□ -2.09
MSH3P20585 MIR1283-1-201ENST00000408494 87 ntBASIC1.98□□□□□ -2.09
MSH3P20585 MIR1252-201ENST00000408861 65 ntBASIC1.98□□□□□ -2.09
MSH3P20585 RNU2-40P-201ENST00000410833 196 ntBASIC1.98□□□□□ -2.09
MSH3P20585 ELOCP21-201ENST00000412558 336 ntBASIC1.98□□□□□ -2.09
MSH3P20585 AC113618.1-201ENST00000416747 285 ntBASIC1.98□□□□□ -2.09
MSH3P20585 AL118496.2-201ENST00000448300 230 ntBASIC1.98□□□□□ -2.09
MSH3P20585 AC016925.1-201ENST00000458303 298 ntBASIC1.98□□□□□ -2.09
MSH3P20585 AC093259.1-201ENST00000509755 300 ntBASIC1.98□□□□□ -2.09
MSH3P20585 AC074133.1-201ENST00000515696 183 ntBASIC1.98□□□□□ -2.09
MSH3P20585 SNORA40.9-201ENST00000515895 93 ntBASIC1.98□□□□□ -2.09
MSH3P20585 RNU6-764P-201ENST00000516396 105 ntBASIC1.98□□□□□ -2.09
MSH3P20585 Y_RNA.715-201ENST00000517082 110 ntBASIC1.98□□□□□ -2.09
MSH3P20585 MIR4659A-201ENST00000580269 81 ntBASIC1.98□□□□□ -2.09
MSH3P20585 MIR3945-201ENST00000581853 98 ntBASIC1.98□□□□□ -2.09
MSH3P20585 AL360085.1-201ENST00000604713 532 ntBASIC1.98□□□□□ -2.09
MSH3P20585 AC116312.1-201ENST00000606841 314 ntBASIC1.98□□□□□ -2.09
MSH3P20585 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.98□□□□□ -2.09
MSH3P20585 AC092881.1-201ENST00000638218 2733 ntBASIC1.98□□□□□ -2.09
MSH3P20585 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
MSH3P20585 RNU6-1305P-201ENST00000364353 104 ntBASIC1.97□□□□□ -2.09
MSH3P20585 Y_RNA.332-201ENST00000365271 113 ntBASIC1.97□□□□□ -2.09
MSH3P20585 RNU6-926P-201ENST00000384075 107 ntBASIC1.97□□□□□ -2.09
MSH3P20585 RNU6-1026P-201ENST00000384465 108 ntBASIC1.97□□□□□ -2.09
MSH3P20585 MRPL35P1-201ENST00000404272 572 ntBASIC1.97□□□□□ -2.09
MSH3P20585 SNORA11.2-201ENST00000408318 127 ntBASIC1.97□□□□□ -2.09
MSH3P20585 SRIP3-201ENST00000413200 219 ntBASIC1.97□□□□□ -2.09
MSH3P20585 RPEP5-201ENST00000441137 268 ntBASIC1.97□□□□□ -2.09
MSH3P20585 FCF1P4-201ENST00000448326 183 ntBASIC1.97□□□□□ -2.09
MSH3P20585 AL137159.1-201ENST00000452808 512 ntBASIC1.97□□□□□ -2.09
MSH3P20585 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.97□□□□□ -2.09
MSH3P20585 PRELID3BP1-201ENST00000457142 540 ntBASIC1.97□□□□□ -2.09
MSH3P20585 RNA5SP233-201ENST00000459153 113 ntBASIC1.97□□□□□ -2.09
MSH3P20585 U8.20-201ENST00000459445 131 ntBASIC1.97□□□□□ -2.09
MSH3P20585 RPL26P26-201ENST00000480251 434 ntBASIC1.97□□□□□ -2.09
MSH3P20585 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.97□□□□□ -2.09
MSH3P20585 RNU6-991P-201ENST00000516168 107 ntBASIC1.97□□□□□ -2.09
MSH3P20585 RNU1-117P-201ENST00000517041 158 ntBASIC1.97□□□□□ -2.09
MSH3P20585 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.97□□□□□ -2.09
MSH3P20585 AC018448.1-201ENST00000552843 316 ntBASIC1.97□□□□□ -2.09
MSH3P20585 AC011476.5-201ENST00000615594 130 ntBASIC1.97□□□□□ -2.09
MSH3P20585 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.97□□□□□ -2.09
MSH3P20585 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.97□□□□□ -2.09
MSH3P20585 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.97□□□□□ -2.09
MSH3P20585 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
MSH3P20585 Y_RNA.145-201ENST00000363527 102 ntBASIC1.96□□□□□ -2.1
MSH3P20585 Y_RNA.153-201ENST00000363615 91 ntBASIC1.96□□□□□ -2.1
MSH3P20585 U3.8-201ENST00000363675 217 ntBASIC1.96□□□□□ -2.1
MSH3P20585 RNU6-438P-201ENST00000365561 103 ntBASIC1.96□□□□□ -2.1
MSH3P20585 Y_RNA.471-201ENST00000384312 102 ntBASIC1.96□□□□□ -2.1
MSH3P20585 AC123900.1-201ENST00000420390 96 ntBASIC1.96□□□□□ -2.1
MSH3P20585 MTND2P23-201ENST00000422990 651 ntBASIC1.96□□□□□ -2.1
MSH3P20585 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.96□□□□□ -2.1
MSH3P20585 UQCRBP2-201ENST00000447827 297 ntBASIC1.96□□□□□ -2.1
MSH3P20585 NDUFB4P10-201ENST00000452541 359 ntBASIC1.96□□□□□ -2.1
MSH3P20585 HMGN2P9-201ENST00000476875 229 ntBASIC1.96□□□□□ -2.1
MSH3P20585 AC067942.3-201ENST00000512025 362 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 177.3 ms