Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.85□□□□□ -2.27
MT-ND4P03905 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.85□□□□□ -2.27
MT-ND4P03905 U6.73-201ENST00000619194 103 ntBASIC0.85□□□□□ -2.27
MT-ND4P03905 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.85□□□□□ -2.27
MT-ND4P03905 U3.8-201ENST00000363675 217 ntBASIC0.84□□□□□ -2.27
MT-ND4P03905 RPL30P16-201ENST00000419341 429 ntBASIC0.84□□□□□ -2.27
MT-ND4P03905 DAP3P1-201ENST00000441522 278 ntBASIC0.84□□□□□ -2.27
MT-ND4P03905 AC098826.2-201ENST00000452011 651 ntBASIC0.84□□□□□ -2.27
MT-ND4P03905 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC0.84□□□□□ -2.27
MT-ND4P03905 RPL39P38-201ENST00000467018 153 ntBASIC0.84□□□□□ -2.27
MT-ND4P03905 AC091179.3-201ENST00000474761 144 ntBASIC0.84□□□□□ -2.27
MT-ND4P03905 AC092991.1-201ENST00000477176 376 ntBASIC0.84□□□□□ -2.27
MT-ND4P03905 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.84□□□□□ -2.27
MT-ND4P03905 RNU6-1198P-201ENST00000516904 67 ntBASIC0.84□□□□□ -2.27
MT-ND4P03905 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.84□□□□□ -2.27
MT-ND4P03905 UBL5P4-201ENST00000562584 236 ntBASIC0.84□□□□□ -2.27
MT-ND4P03905 MIR5695-201ENST00000579717 85 ntBASIC0.84□□□□□ -2.27
MT-ND4P03905 MIR3672-201ENST00000584290 82 ntBASIC0.84□□□□□ -2.27
MT-ND4P03905 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.84□□□□□ -2.27
MT-ND4P03905 AC009248.2-201ENST00000619826 254 ntBASIC0.84□□□□□ -2.27
MT-ND4P03905 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.84□□□□□ -2.27
MT-ND4P03905 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
MT-ND4P03905 Y_RNA.38-201ENST00000362617 102 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 RNU6-451P-201ENST00000362921 107 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 Y_RNA.135-201ENST00000363439 95 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 SNORA25-201ENST00000384384 134 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 MRPL42P3-201ENST00000401492 326 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 MTND1P29-201ENST00000448112 647 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 NDUFB4P10-201ENST00000452541 359 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 RPL39P28-201ENST00000465655 155 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 TRBVA-201ENST00000498804 316 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 SNORD116-28-201ENST00000516123 91 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 RNU6-256P-201ENST00000516747 97 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 AL137100.2-201ENST00000555786 315 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 AC022432.1-201ENST00000595739 310 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 AL022345.2-201ENST00000606307 135 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 BX284668.6-201ENST00000606899 438 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.83□□□□□ -2.28
MT-ND4P03905 AL021879.1-201ENST00000611756 288 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.83□□□□□ -2.28
MT-ND4P03905 AC027335.2-201ENST00000624030 375 ntBASIC0.83□□□□□ -2.28
MT-ND4P03905 RNU1-124P-201ENST00000363861 145 ntBASIC0.82□□□□□ -2.28
MT-ND4P03905 RNU4-38P-201ENST00000364472 129 ntBASIC0.82□□□□□ -2.28
MT-ND4P03905 RNU6-17P-201ENST00000384245 107 ntBASIC0.82□□□□□ -2.28
MT-ND4P03905 RNU6-18P-201ENST00000384527 107 ntBASIC0.82□□□□□ -2.28
MT-ND4P03905 Y_RNA.530-201ENST00000384587 101 ntBASIC0.82□□□□□ -2.28
MT-ND4P03905 RNU6-541P-201ENST00000384709 110 ntBASIC0.82□□□□□ -2.28
MT-ND4P03905 RNU6-159P-201ENST00000391080 106 ntBASIC0.82□□□□□ -2.28
MT-ND4P03905 RNU6-332P-201ENST00000391193 108 ntBASIC0.82□□□□□ -2.28
MT-ND4P03905 RNU2-16P-201ENST00000410712 136 ntBASIC0.82□□□□□ -2.28
MT-ND4P03905 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.82□□□□□ -2.28
MT-ND4P03905 ACA59.1-201ENST00000515966 143 ntBASIC0.82□□□□□ -2.28
MT-ND4P03905 RNU7-99P-201ENST00000516271 62 ntBASIC0.82□□□□□ -2.28
MT-ND4P03905 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.82□□□□□ -2.28
MT-ND4P03905 AC004584.2-201ENST00000570407 410 ntBASIC0.82□□□□□ -2.28
MT-ND4P03905 AC019193.3-201ENST00000609144 554 ntBASIC0.82□□□□□ -2.28
MT-ND4P03905 AC106754.2-201ENST00000623006 233 ntBASIC0.82□□□□□ -2.28
MT-ND4P03905 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.82□□□□□ -2.28
MT-ND4P03905 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
MT-ND4P03905 Y_RNA.100-201ENST00000363141 102 ntBASIC0.81□□□□□ -2.28
MT-ND4P03905 RNU6-137P-201ENST00000363680 108 ntBASIC0.81□□□□□ -2.28
MT-ND4P03905 RNY3P3-201ENST00000363816 102 ntBASIC0.81□□□□□ -2.28
MT-ND4P03905 Y_RNA.212-201ENST00000364177 102 ntBASIC0.81□□□□□ -2.28
MT-ND4P03905 RNU6-793P-201ENST00000384233 104 ntBASIC0.81□□□□□ -2.28
MT-ND4P03905 RNU6-505P-201ENST00000384427 107 ntBASIC0.81□□□□□ -2.28
MT-ND4P03905 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
MT-ND4P03905 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC0.81□□□□□ -2.28
MT-ND4P03905 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC0.81□□□□□ -2.28
MT-ND4P03905 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.81□□□□□ -2.28
MT-ND4P03905 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC0.81□□□□□ -2.28
MT-ND4P03905 MIR5696-201ENST00000578474 85 ntBASIC0.81□□□□□ -2.28
MT-ND4P03905 NBR2-204ENST00000587322 63 ntBASIC0.81□□□□□ -2.28
MT-ND4P03905 MIR6715A-201ENST00000615929 79 ntBASIC0.81□□□□□ -2.28
MT-ND4P03905 SNORD3E-202ENST00000627253 216 ntBASIC0.81□□□□□ -2.28
MT-ND4P03905 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
MT-ND4P03905 RNU6-1266P-201ENST00000362794 105 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 RNU6-306P-201ENST00000384617 107 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
MT-ND4P03905 AL034345.1-201ENST00000407768 123 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 ZNF885P-201ENST00000420174 1098 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.8□□□□□ -2.28
MT-ND4P03905 MTATP6P13-201ENST00000438531 667 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 MTND1P1-201ENST00000445453 368 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 MTND4P18-201ENST00000447010 465 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 SNORD65B-201ENST00000459126 73 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 AP000870.1-201ENST00000472927 406 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 RNU6-922P-201ENST00000516753 99 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 CYCSP23-201ENST00000519781 313 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 AC027419.1-201ENST00000522976 328 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC0.8□□□□□ -2.28
MT-ND4P03905 PIGPP4-201ENST00000584447 307 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 AC104984.5-201ENST00000586878 94 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 AC124303.1-201ENST00000605703 360 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 AL020996.3-201ENST00000606617 222 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 AL513423.1-201ENST00000621695 132 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 MIR1321-201ENST00000637766 79 ntBASIC0.8□□□□□ -2.28
MT-ND4P03905 Y_RNA.179-201ENST00000363844 90 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 RNU6-1090P-201ENST00000364065 94 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 RNU6-280P-201ENST00000364145 104 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms