Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.9□□□□□ -1.94
CBX4O00257 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.9□□□□□ -1.94
CBX4O00257 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
CBX4O00257 AC062016.1-201ENST00000355719 319 ntBASIC2.9□□□□□ -1.95
CBX4O00257 RNU4-82P-201ENST00000362443 140 ntBASIC2.9□□□□□ -1.95
CBX4O00257 RNU1-35P-201ENST00000362782 153 ntBASIC2.9□□□□□ -1.95
CBX4O00257 RNU4-80P-201ENST00000363200 141 ntBASIC2.9□□□□□ -1.95
CBX4O00257 SNORD56.5-201ENST00000364281 72 ntBASIC2.9□□□□□ -1.95
CBX4O00257 SNORA25B-201ENST00000365507 128 ntBASIC2.9□□□□□ -1.95
CBX4O00257 RNU6-338P-201ENST00000383888 105 ntBASIC2.9□□□□□ -1.95
CBX4O00257 MIR512-1-201ENST00000384913 84 ntBASIC2.9□□□□□ -1.95
CBX4O00257 AL031003.1-201ENST00000404229 172 ntBASIC2.9□□□□□ -1.95
CBX4O00257 AC016717.1-201ENST00000448918 286 ntBASIC2.9□□□□□ -1.95
CBX4O00257 AL109933.2-201ENST00000452651 260 ntBASIC2.9□□□□□ -1.95
CBX4O00257 RNU6-221P-201ENST00000459541 99 ntBASIC2.9□□□□□ -1.95
CBX4O00257 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CBX4O00257 SNORA70.12-201ENST00000516084 153 ntBASIC2.9□□□□□ -1.95
CBX4O00257 RNU4-71P-201ENST00000516258 113 ntBASIC2.9□□□□□ -1.95
CBX4O00257 SNORA27.4-201ENST00000516650 95 ntBASIC2.9□□□□□ -1.95
CBX4O00257 AC079600.2-201ENST00000550076 130 ntBASIC2.9□□□□□ -1.95
CBX4O00257 PRELID2P1-201ENST00000552837 301 ntBASIC2.9□□□□□ -1.95
CBX4O00257 RPL21P9-201ENST00000556149 474 ntBASIC2.9□□□□□ -1.95
CBX4O00257 MIR3145-201ENST00000580727 82 ntBASIC2.9□□□□□ -1.95
CBX4O00257 AL162424.1-201ENST00000602325 221 ntBASIC2.9□□□□□ -1.95
CBX4O00257 AC025754.2-201ENST00000606491 432 ntBASIC2.9□□□□□ -1.95
CBX4O00257 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.9□□□□□ -1.95
CBX4O00257 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CBX4O00257 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
CBX4O00257 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.95
CBX4O00257 Y_RNA.275-201ENST00000364726 110 ntBASIC2.89□□□□□ -1.95
CBX4O00257 RNU6-418P-201ENST00000384035 107 ntBASIC2.89□□□□□ -1.95
CBX4O00257 SNORD14D-201ENST00000384390 87 ntBASIC2.89□□□□□ -1.95
CBX4O00257 Y_RNA.539-201ENST00000384635 107 ntBASIC2.89□□□□□ -1.95
CBX4O00257 RNU2-48P-201ENST00000410694 191 ntBASIC2.89□□□□□ -1.95
CBX4O00257 RNA5SP184-201ENST00000411071 108 ntBASIC2.89□□□□□ -1.95
CBX4O00257 BMS1P22-201ENST00000414726 313 ntBASIC2.89□□□□□ -1.95
CBX4O00257 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.89□□□□□ -1.95
CBX4O00257 AC123900.1-201ENST00000420390 96 ntBASIC2.89□□□□□ -1.95
CBX4O00257 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.89□□□□□ -1.95
CBX4O00257 AC008134.1-201ENST00000420943 193 ntBASIC2.89□□□□□ -1.95
CBX4O00257 OOSP1P1-201ENST00000423265 274 ntBASIC2.89□□□□□ -1.95
CBX4O00257 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.89□□□□□ -1.95
CBX4O00257 AC093259.1-201ENST00000509755 300 ntBASIC2.89□□□□□ -1.95
CBX4O00257 MIR3945-201ENST00000581853 98 ntBASIC2.89□□□□□ -1.95
CBX4O00257 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.89□□□□□ -1.95
CBX4O00257 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CBX4O00257 UBE2WP1-201ENST00000362030 340 ntBASIC2.88□□□□□ -1.95
CBX4O00257 MIR592-201ENST00000384959 97 ntBASIC2.88□□□□□ -1.95
CBX4O00257 RNU6-710P-201ENST00000410424 105 ntBASIC2.88□□□□□ -1.95
CBX4O00257 RNU2-52P-201ENST00000410680 190 ntBASIC2.88□□□□□ -1.95
CBX4O00257 AC087499.2-201ENST00000432861 149 ntBASIC2.88□□□□□ -1.95
CBX4O00257 RNU6-56P-201ENST00000516986 93 ntBASIC2.88□□□□□ -1.95
CBX4O00257 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.88□□□□□ -1.95
CBX4O00257 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.88□□□□□ -1.95
CBX4O00257 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.88□□□□□ -1.95
CBX4O00257 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.88□□□□□ -1.95
CBX4O00257 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.88□□□□□ -1.95
CBX4O00257 RNU6-740P-201ENST00000364734 105 ntBASIC2.87□□□□□ -1.95
CBX4O00257 Y_RNA.332-201ENST00000365271 113 ntBASIC2.87□□□□□ -1.95
CBX4O00257 SNORD58.1-201ENST00000391313 66 ntBASIC2.87□□□□□ -1.95
CBX4O00257 Y_RNA.590-201ENST00000410140 107 ntBASIC2.87□□□□□ -1.95
CBX4O00257 RNA5SP344-201ENST00000411081 104 ntBASIC2.87□□□□□ -1.95
CBX4O00257 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.87□□□□□ -1.95
CBX4O00257 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.87□□□□□ -1.95
CBX4O00257 AP004217.1-201ENST00000480579 346 ntBASIC2.87□□□□□ -1.95
CBX4O00257 AC018868.1-201ENST00000491307 315 ntBASIC2.87□□□□□ -1.95
CBX4O00257 SNORA4.4-201ENST00000515921 135 ntBASIC2.87□□□□□ -1.95
CBX4O00257 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.87□□□□□ -1.95
CBX4O00257 RNU6-191P-201ENST00000516295 94 ntBASIC2.87□□□□□ -1.95
CBX4O00257 Y_RNA.679-201ENST00000516416 91 ntBASIC2.87□□□□□ -1.95
CBX4O00257 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.87□□□□□ -1.95
CBX4O00257 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.87□□□□□ -1.95
CBX4O00257 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CBX4O00257 AC005828.6-201ENST00000606610 232 ntBASIC2.87□□□□□ -1.95
CBX4O00257 MIR6715A-201ENST00000615929 79 ntBASIC2.87□□□□□ -1.95
CBX4O00257 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.87□□□□□ -1.95
CBX4O00257 MAPK10-266ENST00000641066 6555 ntBASIC2.87□□□□□ -1.95
CBX4O00257 AC108206.1-201ENST00000570186 4159 ntBASIC2.86□□□□□ -1.95
CBX4O00257 MIR181A2-201ENST00000384863 110 ntBASIC2.86□□□□□ -1.95
CBX4O00257 RNU2-61P-201ENST00000411069 191 ntBASIC2.86□□□□□ -1.95
CBX4O00257 SRIP3-201ENST00000413200 219 ntBASIC2.86□□□□□ -1.95
CBX4O00257 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.86□□□□□ -1.95
CBX4O00257 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.86□□□□□ -1.95
CBX4O00257 AL357134.1-201ENST00000445848 426 ntBASIC2.86□□□□□ -1.95
CBX4O00257 AC010531.2-201ENST00000465012 153 ntBASIC2.86□□□□□ -1.95
CBX4O00257 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.86□□□□□ -1.95
CBX4O00257 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.86□□□□□ -1.95
CBX4O00257 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CBX4O00257 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.86□□□□□ -1.95
CBX4O00257 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CBX4O00257 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CBX4O00257 RNU6-271P-201ENST00000363858 105 ntBASIC2.85□□□□□ -1.95
CBX4O00257 Y_RNA.269-201ENST00000364685 89 ntBASIC2.85□□□□□ -1.95
CBX4O00257 RNU6-1289P-201ENST00000384431 106 ntBASIC2.85□□□□□ -1.95
CBX4O00257 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.85□□□□□ -1.95
CBX4O00257 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.85□□□□□ -1.95
CBX4O00257 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.85□□□□□ -1.95
CBX4O00257 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.85□□□□□ -1.95
CBX4O00257 ZNF861P-201ENST00000588126 639 ntBASIC2.85□□□□□ -1.95
CBX4O00257 AC009779.6-201ENST00000603972 165 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms