Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
USP3Q9Y6I4 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
USP3Q9Y6I4 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.77□□□□□ -1.81
USP3Q9Y6I4 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
USP3Q9Y6I4 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
USP3Q9Y6I4 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.76□□□□□ -1.81
USP3Q9Y6I4 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
USP3Q9Y6I4 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.76□□□□□ -1.81
USP3Q9Y6I4 MIR23B-201ENST00000384832 97 ntBASIC3.76□□□□□ -1.81
USP3Q9Y6I4 CYCSP49-201ENST00000420810 319 ntBASIC3.76□□□□□ -1.81
USP3Q9Y6I4 AC245102.2-201ENST00000448956 180 ntBASIC3.76□□□□□ -1.81
USP3Q9Y6I4 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC3.76□□□□□ -1.81
USP3Q9Y6I4 RPL27AP5-201ENST00000469428 449 ntBASIC3.76□□□□□ -1.81
USP3Q9Y6I4 RPS27P22-201ENST00000478056 241 ntBASIC3.76□□□□□ -1.81
USP3Q9Y6I4 AC110768.1-201ENST00000509222 400 ntBASIC3.76□□□□□ -1.81
USP3Q9Y6I4 RNU6-63P-201ENST00000516690 95 ntBASIC3.76□□□□□ -1.81
USP3Q9Y6I4 SNORA70.18-201ENST00000516696 98 ntBASIC3.76□□□□□ -1.81
USP3Q9Y6I4 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.76□□□□□ -1.81
USP3Q9Y6I4 MIR4644-201ENST00000579929 84 ntBASIC3.76□□□□□ -1.81
USP3Q9Y6I4 AC108081.1-201ENST00000604358 221 ntBASIC3.76□□□□□ -1.81
USP3Q9Y6I4 AC004832.5-201ENST00000608677 401 ntBASIC3.76□□□□□ -1.81
USP3Q9Y6I4 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
USP3Q9Y6I4 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
USP3Q9Y6I4 AL049781.1-201ENST00000623195 3585 ntBASIC3.76□□□□□ -1.81
USP3Q9Y6I4 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
USP3Q9Y6I4 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
USP3Q9Y6I4 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
USP3Q9Y6I4 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
USP3Q9Y6I4 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
USP3Q9Y6I4 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.75□□□□□ -1.81
USP3Q9Y6I4 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.75□□□□□ -1.81
USP3Q9Y6I4 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
USP3Q9Y6I4 RNU6-438P-201ENST00000365561 103 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 RNU6-1336P-201ENST00000383886 109 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 RNU6-880P-201ENST00000384526 107 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 RNU6-1274P-201ENST00000384557 107 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 MIR624-201ENST00000385217 97 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 MIR670-201ENST00000390142 98 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 RNU11-5P-201ENST00000391216 129 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 AC006028.1-201ENST00000438379 402 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 SNORD11-201ENST00000459124 84 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 RPS26P45-201ENST00000471748 340 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 RPS29P21-201ENST00000496272 170 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 MIR449C-201ENST00000516047 92 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 RNU6-586P-201ENST00000517265 104 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 AC027419.1-201ENST00000522976 328 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
USP3Q9Y6I4 RPL23AP91-201ENST00000569211 455 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 AC008739.3-201ENST00000603262 127 ntBASIC3.75□□□□□ -1.81
USP3Q9Y6I4 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
USP3Q9Y6I4 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
USP3Q9Y6I4 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
USP3Q9Y6I4 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.74□□□□□ -1.81
USP3Q9Y6I4 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
USP3Q9Y6I4 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.74□□□□□ -1.81
USP3Q9Y6I4 RPS29P4-201ENST00000414733 161 ntBASIC3.74□□□□□ -1.81
USP3Q9Y6I4 DBIP2-201ENST00000419076 262 ntBASIC3.74□□□□□ -1.81
USP3Q9Y6I4 AC002075.2-201ENST00000425207 252 ntBASIC3.74□□□□□ -1.81
USP3Q9Y6I4 AC016717.1-201ENST00000448918 286 ntBASIC3.74□□□□□ -1.81
USP3Q9Y6I4 Y_RNA.651-201ENST00000459380 103 ntBASIC3.74□□□□□ -1.81
USP3Q9Y6I4 ATP5EP1-201ENST00000510257 156 ntBASIC3.74□□□□□ -1.81
USP3Q9Y6I4 SNORA18.4-201ENST00000516440 124 ntBASIC3.74□□□□□ -1.81
USP3Q9Y6I4 AL121890.5-201ENST00000620848 304 ntBASIC3.74□□□□□ -1.81
USP3Q9Y6I4 AP003355.3-201ENST00000623465 114 ntBASIC3.74□□□□□ -1.81
USP3Q9Y6I4 UGP2-230ENST00000626380 276 ntTSL 5 BASIC3.74□□□□□ -1.81
USP3Q9Y6I4 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
USP3Q9Y6I4 MTND5P32-201ENST00000560711 1802 ntBASIC3.74□□□□□ -1.81
USP3Q9Y6I4 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
USP3Q9Y6I4 GABRG2-229ENST00000641017 3628 ntBASIC3.73□□□□□ -1.81
USP3Q9Y6I4 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
USP3Q9Y6I4 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.73□□□□□ -1.81
USP3Q9Y6I4 RNU1-22P-201ENST00000363334 158 ntBASIC3.73□□□□□ -1.81
USP3Q9Y6I4 MIR562-201ENST00000384894 95 ntBASIC3.73□□□□□ -1.81
USP3Q9Y6I4 RNA5SP127-201ENST00000411051 133 ntBASIC3.73□□□□□ -1.81
USP3Q9Y6I4 AL031183.1-201ENST00000457667 207 ntBASIC3.73□□□□□ -1.81
USP3Q9Y6I4 AC080013.2-201ENST00000460866 323 ntBASIC3.73□□□□□ -1.81
USP3Q9Y6I4 OR9P1P-201ENST00000496431 281 ntBASIC3.73□□□□□ -1.81
USP3Q9Y6I4 AC097462.1-201ENST00000514125 324 ntBASIC3.73□□□□□ -1.81
USP3Q9Y6I4 Y_RNA.694-201ENST00000516677 117 ntBASIC3.73□□□□□ -1.81
USP3Q9Y6I4 SCARNA11.3-201ENST00000517276 130 ntBASIC3.73□□□□□ -1.81
USP3Q9Y6I4 RNU1-104P-201ENST00000517280 175 ntBASIC3.73□□□□□ -1.81
USP3Q9Y6I4 AL365205.2-201ENST00000594586 68 ntBASIC3.73□□□□□ -1.81
USP3Q9Y6I4 AL929325.1-201ENST00000603096 117 ntBASIC3.73□□□□□ -1.81
USP3Q9Y6I4 MIR7851-201ENST00000610611 160 ntBASIC3.73□□□□□ -1.81
USP3Q9Y6I4 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
USP3Q9Y6I4 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
USP3Q9Y6I4 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.73□□□□□ -1.81
USP3Q9Y6I4 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
USP3Q9Y6I4 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.73□□□□□ -1.81
USP3Q9Y6I4 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
USP3Q9Y6I4 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.73□□□□□ -1.81
USP3Q9Y6I4 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP3Q9Y6I4 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
USP3Q9Y6I4 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP3Q9Y6I4 RNU6-944P-201ENST00000364023 107 ntBASIC3.72□□□□□ -1.81
USP3Q9Y6I4 MIR218-2-201ENST00000385006 110 ntBASIC3.72□□□□□ -1.81
USP3Q9Y6I4 AC006989.1-201ENST00000427212 131 ntBASIC3.72□□□□□ -1.81
USP3Q9Y6I4 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.72□□□□□ -1.81
USP3Q9Y6I4 RPS29P31-201ENST00000446147 164 ntBASIC3.72□□□□□ -1.81
USP3Q9Y6I4 U3.44-201ENST00000458938 192 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms