Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.62□□□□□ -1.99
VSX1Q9NZR4 AC008885.1-201ENST00000514930 301 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 RNU6-436P-201ENST00000516171 114 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 RNU6-948P-201ENST00000516374 107 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 AC022616.8-201ENST00000533569 253 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 AP002001.1-203ENST00000534002 267 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 AC009127.3-201ENST00000570531 403 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 MIR4643-201ENST00000577473 78 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
VSX1Q9NZR4 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
VSX1Q9NZR4 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.217-201ENST00000364214 105 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 RNU6-454P-201ENST00000364292 107 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 SNORA71.1-201ENST00000364523 117 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.292-201ENST00000364904 97 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 SNORA70.4-201ENST00000365509 134 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 RNU6-1289P-201ENST00000384431 106 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 RNU4-70P-201ENST00000384579 139 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 MIR561-201ENST00000385216 97 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.61□□□□□ -1.99
VSX1Q9NZR4 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.61□□□□□ -1.99
VSX1Q9NZR4 RPS29P6-201ENST00000438196 145 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.61□□□□□ -1.99
VSX1Q9NZR4 SNORD2.1-201ENST00000458762 69 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.641-201ENST00000459414 105 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 RPS27AP9-201ENST00000477681 438 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 RN7SKP40-201ENST00000517211 242 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.61□□□□□ -1.99
VSX1Q9NZR4 AC005828.6-201ENST00000606610 232 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 AC090115.4-201ENST00000609970 188 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 AC096577.2-201ENST00000611455 153 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 AL078604.3-201ENST00000615580 211 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 FO624990.1-201ENST00000636373 85 ntBASIC2.61□□□□□ -1.99
VSX1Q9NZR4 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.6□□□□□ -1.99
VSX1Q9NZR4 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.6□□□□□ -1.99
VSX1Q9NZR4 RNU1-35P-201ENST00000362782 153 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 RNA5SP393-201ENST00000363423 117 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 RNU6-324P-201ENST00000363957 106 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 RNU6-944P-201ENST00000364023 107 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 SNORD115-30-201ENST00000364117 82 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 SNORD46.1-201ENST00000364139 104 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.329-201ENST00000365209 107 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 SNORA9.2-201ENST00000365361 133 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.361-201ENST00000365515 120 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 RNU6-438P-201ENST00000365561 103 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 RNU6-975P-201ENST00000384296 105 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 MIR627-201ENST00000384979 97 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 MIR548I3-201ENST00000408378 149 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 MIR548I1-201ENST00000408810 149 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 AC010154.1-201ENST00000425857 269 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 MTND5P15-201ENST00000434246 349 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 RPL23AP3-201ENST00000453844 468 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 AC016925.1-201ENST00000458303 298 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 RNU7-57P-201ENST00000459540 60 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 AC107016.2-201ENST00000547968 190 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 MIR3651-201ENST00000630427 90 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 U6.115-201ENST00000636045 103 ntBASIC2.6□□□□□ -1.99
VSX1Q9NZR4 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
VSX1Q9NZR4 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.6□□□□□ -1.99
VSX1Q9NZR4 MAPK10-266ENST00000641066 6555 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 AC096644.4-201ENST00000563417 2912 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.59□□□□□ -1.99
VSX1Q9NZR4 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
VSX1Q9NZR4 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.76-201ENST00000362931 109 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 SNORA38.1-201ENST00000364172 131 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.555-201ENST00000384673 110 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 AL031003.1-201ENST00000404229 172 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.793-201ENST00000411222 111 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.59□□□□□ -1.99
VSX1Q9NZR4 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.59□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.644-201ENST00000459006 113 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.59□□□□□ -1.99
VSX1Q9NZR4 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.59□□□□□ -1.99
VSX1Q9NZR4 RNA5SP76-201ENST00000516277 87 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.674-201ENST00000516362 113 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 SNORA31.15-201ENST00000516771 132 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 RPL21P9-201ENST00000556149 474 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.59□□□□□ -1.99
VSX1Q9NZR4 MIR4446-201ENST00000578505 67 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 AC091953.5-201ENST00000622919 233 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 AC006435.5-201ENST00000624486 112 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 snoZ196.1-201ENST00000625269 89 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 AC135776.4-201ENST00000624300 1904 ntBASIC2.59□□□□□ -1.99
VSX1Q9NZR4 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.59□□□□□ -2
VSX1Q9NZR4 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -2
VSX1Q9NZR4 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.58□□□□□ -2
VSX1Q9NZR4 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.58□□□□□ -2
VSX1Q9NZR4 MIR411-201ENST00000362239 96 ntBASIC2.58□□□□□ -2
VSX1Q9NZR4 RNU4-80P-201ENST00000363200 141 ntBASIC2.58□□□□□ -2
VSX1Q9NZR4 RNU6-271P-201ENST00000363858 105 ntBASIC2.58□□□□□ -2
VSX1Q9NZR4 RNU6-1235P-201ENST00000384559 107 ntBASIC2.58□□□□□ -2
VSX1Q9NZR4 MIR512-1-201ENST00000384913 84 ntBASIC2.58□□□□□ -2
VSX1Q9NZR4 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.58□□□□□ -2
VSX1Q9NZR4 RNU2-32P-201ENST00000411193 191 ntBASIC2.58□□□□□ -2
VSX1Q9NZR4 Y_RNA.626-201ENST00000411288 95 ntBASIC2.58□□□□□ -2
VSX1Q9NZR4 AC008134.1-201ENST00000420943 193 ntBASIC2.58□□□□□ -2
VSX1Q9NZR4 RNU6-498P-201ENST00000459468 107 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 143.6 ms