Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC87Q9NVE4 RMST_8.1-201ENST00000610287 165 ntBASIC3.84□□□□□ -1.79
CCDC87Q9NVE4 AC010329.5-201ENST00000623497 2174 ntBASIC3.84□□□□□ -1.79
CCDC87Q9NVE4 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 Y_RNA.456-201ENST00000384232 111 ntBASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 RNU6-804P-201ENST00000384286 107 ntBASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 MIR1294-201ENST00000408503 142 ntBASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 EEF1B2P7-201ENST00000451177 676 ntBASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 TRBV12-1-201ENST00000479785 344 ntBASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 AC005840.1-201ENST00000498412 377 ntBASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 CARD18-203ENST00000532895 422 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 AC013791.1-201ENST00000616619 62 ntBASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 XIST_intron.1-201ENST00000619444 68 ntBASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 UCA1.1-201ENST00000620952 75 ntBASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 MTND1P7-201ENST00000632801 297 ntBASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 AC110079.1-202ENST00000635213 138 ntBASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 U6.98-201ENST00000637157 84 ntBASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 MAPK10-322ENST00000641485 4530 ntBASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC87Q9NVE4 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 AC091564.4-201ENST00000533934 2194 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 Y_RNA.23-201ENST00000362496 106 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 Y_RNA.75-201ENST00000362927 97 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 RNU6-899P-201ENST00000363947 107 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 SNORA51.4-201ENST00000364993 124 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 Y_RNA.580-201ENST00000391004 95 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 MIR1185-2-201ENST00000408687 86 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 AC063976.3-201ENST00000426849 329 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 RPS20P10-201ENST00000451209 253 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 U8.19-201ENST00000459095 133 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 AC114982.1-201ENST00000469402 321 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 YWHAEP4-201ENST00000505390 198 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 SCGB1D5P-201ENST00000515134 247 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 RNU6-1098P-201ENST00000516772 96 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 SCARNA20.6-201ENST00000517251 106 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 AC100767.1-201ENST00000528178 123 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 AC104465.1-201ENST00000611365 139 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 AC090517.3-201ENST00000625170 141 ntBASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC87Q9NVE4 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC87Q9NVE4 SNORA72.4-201ENST00000384174 132 ntBASIC3.81□□□□□ -1.8
CCDC87Q9NVE4 AL355497.1-201ENST00000406262 551 ntBASIC3.81□□□□□ -1.8
CCDC87Q9NVE4 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC87Q9NVE4 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.81□□□□□ -1.8
CCDC87Q9NVE4 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC87Q9NVE4 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.81□□□□□ -1.8
CCDC87Q9NVE4 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC87Q9NVE4 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC87Q9NVE4 RNU6-851P-201ENST00000384565 107 ntBASIC3.8□□□□□ -1.8
CCDC87Q9NVE4 RNU6-855P-201ENST00000410395 104 ntBASIC3.8□□□□□ -1.8
CCDC87Q9NVE4 MICF-203ENST00000432679 129 ntBASIC3.8□□□□□ -1.8
CCDC87Q9NVE4 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC87Q9NVE4 HMGN2P9-201ENST00000476875 229 ntBASIC3.8□□□□□ -1.8
CCDC87Q9NVE4 RPS27AP9-201ENST00000477681 438 ntBASIC3.8□□□□□ -1.8
CCDC87Q9NVE4 RN7SKP164-201ENST00000516138 266 ntBASIC3.8□□□□□ -1.8
CCDC87Q9NVE4 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC87Q9NVE4 MIR5688-201ENST00000580619 83 ntBASIC3.8□□□□□ -1.8
CCDC87Q9NVE4 PWAR6-201ENST00000552334 4618 ntBASIC3.8□□□□□ -1.8
CCDC87Q9NVE4 AL159152.1-201ENST00000635019 2587 ntBASIC3.8□□□□□ -1.8
CCDC87Q9NVE4 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC87Q9NVE4 AC096644.4-201ENST00000563417 2912 ntBASIC3.8□□□□□ -1.8
CCDC87Q9NVE4 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 Y_RNA.8-201ENST00000362353 102 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 RNU6-103P-201ENST00000363686 107 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 RNU6-704P-201ENST00000364162 103 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 Y_RNA.272-201ENST00000364696 102 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 SNORD113-1-201ENST00000365321 69 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 Y_RNA.341-201ENST00000365341 102 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 SNORA26.5-201ENST00000391215 123 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 MIR1283-1-201ENST00000408494 87 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 RNU2-2P-201ENST00000410396 191 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 MIR4753-201ENST00000585119 83 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 AP001485.1-201ENST00000604799 199 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 RNU2-4P-201ENST00000606190 192 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 U2.15-201ENST00000611544 191 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 U2.16-201ENST00000613119 191 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 U2.12-201ENST00000613778 191 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 U2.9-201ENST00000615427 191 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 U2.11-201ENST00000616345 191 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 U2.2-201ENST00000616535 191 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 U2.3-201ENST00000617785 191 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 U2.19-201ENST00000618602 191 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 RNU2-1-201ENST00000618664 191 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 U2.6-201ENST00000619225 191 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 U2.5-201ENST00000619465 191 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 U2.10-201ENST00000620268 191 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms