Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 RNU6-296P-201ENST00000384608 107 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 MIR504-201ENST00000385065 83 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 MIR1261-201ENST00000408659 82 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 RNU6-1304P-201ENST00000411374 106 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 AC016909.1-201ENST00000415916 166 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 USP9YP16-201ENST00000430287 407 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 AC245047.4-201ENST00000433189 144 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 HMGN2P34-201ENST00000437647 269 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 AC010095.1-201ENST00000443543 144 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 USP9YP23-201ENST00000455085 407 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 RNU7-87P-201ENST00000459343 62 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 SCARNA16.2-201ENST00000516520 172 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 MIR5701-3-201ENST00000578890 82 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 MIR5701-1-201ENST00000585138 82 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 BX248123.2-201ENST00000606318 124 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 MIR5701-2-201ENST00000615634 82 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 snoZ196.1-201ENST00000625269 89 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 MIR338-201ENST00000636369 67 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 AC099654.5-201ENST00000636479 350 ntBASIC1.44□□□□□ -2.18
EXOSC3Q9NQT5 AP000648.3-201ENST00000623539 4507 ntBASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 RNU6-874P-201ENST00000362390 105 ntBASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 RNY1P16-201ENST00000363063 111 ntBASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 Y_RNA.166-201ENST00000363730 102 ntBASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 Y_RNA.179-201ENST00000363844 90 ntBASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 RNU6-417P-201ENST00000384712 107 ntBASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 SNORA75.4-201ENST00000391278 119 ntBASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 Y_RNA.691-201ENST00000516611 103 ntBASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 RNA5SP437-201ENST00000517249 129 ntBASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 AC084364.2-201ENST00000546924 395 ntBASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 AC016727.1-205ENST00000605437 569 ntBASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 AC010999.1-201ENST00000611856 324 ntBASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 AC022306.2-201ENST00000617563 647 ntBASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 AC099654.14-201ENST00000638599 341 ntBASIC1.43□□□□□ -2.18
EXOSC3Q9NQT5 AC010615.1-201ENST00000594254 1764 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 snoU2-30.2-201ENST00000362805 70 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 Y_RNA.287-201ENST00000364853 94 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 RNU6-1283P-201ENST00000365314 105 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 RNU6-997P-201ENST00000384725 107 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 MIR517C-201ENST00000385103 95 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 RNU6-700P-201ENST00000391043 107 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 MIR190B-201ENST00000401119 79 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 MIR1253-201ENST00000408273 105 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 RNU2-7P-201ENST00000410794 178 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 AC007098.1-201ENST00000420122 367 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 CYCSP49-201ENST00000420810 319 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 AC092423.1-201ENST00000430165 186 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 RPL23AP50-201ENST00000434149 455 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 HMGN2P23-201ENST00000456759 269 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 HMGN1P12-201ENST00000499125 195 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 PRDX4P1-201ENST00000507189 574 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 RNU6-1114P-201ENST00000516022 107 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 RNU6-120P-201ENST00000516077 103 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 SNORA20.3-201ENST00000516880 132 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 AC093023.1-201ENST00000547375 507 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 AL669831.3-213ENST00000636676 183 ntBASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
EXOSC3Q9NQT5 RNU6-1019P-201ENST00000364424 107 ntBASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 RNA5SP190-201ENST00000365222 118 ntBASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 RNU6-281P-201ENST00000384212 103 ntBASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 RNU6-370P-201ENST00000411008 104 ntBASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 RNU6-1001P-201ENST00000411265 100 ntBASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 AC138393.2-201ENST00000414742 246 ntBASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 AC098614.3-201ENST00000438957 440 ntBASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 HSPE1P9-201ENST00000440046 311 ntBASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 Y_RNA.635-201ENST00000459041 101 ntBASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 U8.22-201ENST00000459141 133 ntBASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 AC093303.1-201ENST00000514549 295 ntBASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 AC025647.1-201ENST00000517879 253 ntBASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 AC125232.2-201ENST00000592457 143 ntBASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 AL353149.1-201ENST00000610667 244 ntBASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.41□□□□□ -2.18
EXOSC3Q9NQT5 MTND5P35-201ENST00000557537 1720 ntBASIC1.4□□□□□ -2.18
EXOSC3Q9NQT5 MIR520A-201ENST00000384862 85 ntBASIC1.4□□□□□ -2.19
EXOSC3Q9NQT5 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
EXOSC3Q9NQT5 RNA5SP213-201ENST00000391031 106 ntBASIC1.4□□□□□ -2.19
EXOSC3Q9NQT5 RNA5SP467-201ENST00000391274 118 ntBASIC1.4□□□□□ -2.19
EXOSC3Q9NQT5 RNU1-139P-201ENST00000391307 165 ntBASIC1.4□□□□□ -2.19
EXOSC3Q9NQT5 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
EXOSC3Q9NQT5 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms