Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 snoU13.25-201ENST00000458945 104 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 RNU7-90P-201ENST00000459216 62 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 MTCO3P38-201ENST00000468910 766 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 NTS-203ENST00000551529 801 ntTSL 3 BASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 MIR5692C1-201ENST00000585309 91 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 AC087683.1-201ENST00000591187 441 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 Y_RNA.100-201ENST00000363141 102 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 RNU6-82P-201ENST00000363970 107 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 RNU6-784P-201ENST00000384330 106 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 RNU6-424P-201ENST00000384367 105 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 MIR521-1-201ENST00000384902 87 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 RNA5SP213-201ENST00000391031 106 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 AL591806.2-201ENST00000433122 173 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 AL359672.1-201ENST00000442302 409 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 USP9YP29-201ENST00000445112 563 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 RNU7-94P-201ENST00000459576 63 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 AL049830.1-201ENST00000468034 425 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 MTND3P7-201ENST00000474435 343 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 AC022493.2-201ENST00000506122 481 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 RPL23AP94-201ENST00000512518 302 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 SNORA19.2-201ENST00000516013 114 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 SNORA40.12-201ENST00000516329 111 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 AC007834.2-201ENST00000536310 343 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 AL157687.1-201ENST00000554853 619 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 AL357312.1-201ENST00000603879 298 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 AL096861.1-201ENST00000610899 123 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 AL121757.2-201ENST00000611223 313 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 MIR8076-201ENST00000611401 83 ntBASIC0.54□□□□□ -2.32
VCX3AQ9NNX9 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 Y_RNA.169-201ENST00000363745 96 ntBASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 Y_RNA.378-201ENST00000365652 113 ntBASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 RNU6-1103P-201ENST00000384150 107 ntBASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 RNY3P9-201ENST00000384727 106 ntBASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 SNORA59A-201ENST00000459326 152 ntBASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 AC091133.4-201ENST00000511142 308 ntBASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 AC092436.3-201ENST00000511788 257 ntBASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 AP000889.1-201ENST00000530968 660 ntBASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 AP003484.1-201ENST00000530974 250 ntBASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 MIR4528-201ENST00000577763 90 ntBASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 CPDP1-201ENST00000579660 283 ntBASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 MIR3945-201ENST00000581853 98 ntBASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 SNORA28-201ENST00000606769 126 ntBASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.53□□□□□ -2.32
VCX3AQ9NNX9 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 RNU6-137P-201ENST00000363680 108 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 RNU4-20P-201ENST00000365601 151 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 RNU6-245P-201ENST00000384020 107 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 RNU6-110P-201ENST00000384508 104 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 SNORD37.1-201ENST00000390968 65 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 SNORA11.2-201ENST00000408318 127 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 MRPS10P2-201ENST00000431226 381 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 AL606489.2-201ENST00000433886 234 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 MTCO2P16-201ENST00000436962 677 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 AC104332.1-201ENST00000440471 797 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 AL157398.1-201ENST00000452981 186 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 COX6CP14-201ENST00000469580 174 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 MTCO1P29-201ENST00000496868 288 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 Y_RNA.654-201ENST00000497848 106 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 AC027419.1-201ENST00000522976 328 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 MIR4438-201ENST00000585271 93 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 BNIP3P10-201ENST00000605360 577 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 MIR6835-201ENST00000621552 64 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 CASC19-280ENST00000642102 1351 ntBASIC0.52□□□□□ -2.33
VCX3AQ9NNX9 MIR378A-201ENST00000362177 66 ntBASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 U3.8-201ENST00000363675 217 ntBASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 SNORD115-8-201ENST00000363856 82 ntBASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 SNORD115-38-201ENST00000365037 82 ntBASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 RNU6-38P-201ENST00000384085 107 ntBASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 AC245047.8-201ENST00000456455 284 ntBASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 OR9P1P-201ENST00000496431 281 ntBASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 RNU4-54P-201ENST00000516428 129 ntBASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 RNA5SP54-201ENST00000516951 92 ntBASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 AC023157.2-201ENST00000540596 141 ntBASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 MTATP6P24-201ENST00000576835 677 ntBASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 FAM157A-202ENST00000615155 405 ntBASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 AL353997.5-201ENST00000618886 171 ntBASIC0.51□□□□□ -2.33
VCX3AQ9NNX9 RNU6-1266P-201ENST00000362794 105 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 RNU6-727P-201ENST00000363592 107 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 Y_RNA.167-201ENST00000363735 109 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 Y_RNA.265-201ENST00000364677 108 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 Y_RNA.415-201ENST00000384012 112 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 RNU6-933P-201ENST00000384424 107 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 AC108667.1-201ENST00000428618 249 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 AL121890.1-201ENST00000435457 205 ntBASIC0.5□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 154.6 ms