Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 CYP2C61P-201ENST00000604072 290 ntBASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 AC005296.1-201ENST00000616145 209 ntBASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 AL162373.1-201ENST00000620433 407 ntBASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 RNU6-60P-201ENST00000364792 103 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 RNU6-867P-201ENST00000364956 107 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 U3.40-201ENST00000408706 208 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 AC009237.7-201ENST00000447357 229 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 AC114982.1-201ENST00000469402 321 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 RPL17P19-201ENST00000489069 552 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 AC097473.1-201ENST00000508142 408 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 MIR4287-201ENST00000579398 78 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 MIR5695-201ENST00000579717 85 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 MIR4452-201ENST00000583004 71 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 LARP7P1-201ENST00000605576 316 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 AC084781.2-201ENST00000615568 161 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 AL359314.1-201ENST00000616913 261 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 MTND4LP32-201ENST00000636111 270 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 AC006026.1-201ENST00000444025 1803 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 LINC02555-201ENST00000563933 1951 ntBASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.01□□□□□ -2.09
ZNF541Q9H0D2 RNU1-58P-201ENST00000362413 163 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 Y_RNA.106-201ENST00000363189 100 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 RNU6-137P-201ENST00000363680 108 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 Y_RNA.263-201ENST00000364659 114 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 Y_RNA.332-201ENST00000365271 113 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 RNU6-418P-201ENST00000384035 107 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 MIR17-201ENST00000385012 84 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 MIR190B-201ENST00000401119 79 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 Y_RNA.604-201ENST00000410574 102 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 MTCO2P27-201ENST00000420740 428 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2□□□□□ -2.09
ZNF541Q9H0D2 HMGN2P38-201ENST00000423806 265 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2□□□□□ -2.09
ZNF541Q9H0D2 USP9YP16-201ENST00000430287 407 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2□□□□□ -2.09
ZNF541Q9H0D2 USP9YP23-201ENST00000455085 407 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 RNU1-123P-201ENST00000458950 160 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 RNA5SP57-201ENST00000459463 123 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 FGF7P4-201ENST00000509595 295 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 RNU2-19P-201ENST00000517288 84 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2□□□□□ -2.09
ZNF541Q9H0D2 UBL5P4-201ENST00000562584 236 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 AC005014.2-201ENST00000607795 599 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 AC098657.3-201ENST00000620434 263 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2□□□□□ -2.09
ZNF541Q9H0D2 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2□□□□□ -2.09
ZNF541Q9H0D2 AC112487.2-201ENST00000637950 304 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 MTND5P16-201ENST00000460269 1703 ntBASIC2□□□□□ -2.09
ZNF541Q9H0D2 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
ZNF541Q9H0D2 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2□□□□□ -2.09
ZNF541Q9H0D2 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
ZNF541Q9H0D2 RNA5SP276-201ENST00000362580 94 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 RNU6-727P-201ENST00000363592 107 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 RNU6-1188P-201ENST00000363795 107 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 RNU6-873P-201ENST00000363833 107 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 Y_RNA.179-201ENST00000363844 90 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 RNU6-245P-201ENST00000384020 107 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 RNU4-52P-201ENST00000384209 138 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 MIR1283-1-201ENST00000408494 87 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 Y_RNA.646-201ENST00000410980 101 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 AP000870.1-201ENST00000472927 406 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 RNU6-948P-201ENST00000516374 107 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 DEFB131C-201ENST00000528817 165 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 APOOP3-201ENST00000536787 586 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 AL355375.2-201ENST00000574825 175 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 MIR4419B-201ENST00000577260 68 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 SNORD53B-201ENST00000577887 78 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 AL590240.4-201ENST00000616908 390 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 SDR42E1P4-201ENST00000620894 481 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 AL078596.1-201ENST00000624856 447 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 AL008636.1-201ENST00000625038 1018 ntBASIC1.99□□□□□ -2.09
ZNF541Q9H0D2 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 SNORA7.1-201ENST00000363750 139 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 RNA5SP493-201ENST00000364115 91 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 RNU6-1164P-201ENST00000364428 107 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 RNU6-99P-201ENST00000364721 107 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 RNU5E-4P-201ENST00000364931 120 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 RNU6-310P-201ENST00000384655 107 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 MIR597-201ENST00000384968 97 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 RNU6-159P-201ENST00000391080 106 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 MIR1323-201ENST00000408090 73 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 MTND3P23-201ENST00000431980 347 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 AC236972.2-201ENST00000434979 310 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 MIR2053-201ENST00000459295 91 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms