Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 Y_RNA.515-201ENST00000384535 112 ntBASIC3.6□□□□□ -1.83
TRAIPQ9BWF2 AL355796.1-201ENST00000406706 323 ntBASIC3.6□□□□□ -1.83
TRAIPQ9BWF2 AC244505.4-201ENST00000434905 287 ntBASIC3.6□□□□□ -1.83
TRAIPQ9BWF2 SSXP5-201ENST00000443473 287 ntBASIC3.6□□□□□ -1.83
TRAIPQ9BWF2 CENPBD1P1-201ENST00000464061 469 ntBASIC3.6□□□□□ -1.83
TRAIPQ9BWF2 RPS29P21-201ENST00000496272 170 ntBASIC3.6□□□□□ -1.83
TRAIPQ9BWF2 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
TRAIPQ9BWF2 AC011406.1-201ENST00000512440 370 ntBASIC3.6□□□□□ -1.83
TRAIPQ9BWF2 RNA5SP20-201ENST00000515976 84 ntBASIC3.6□□□□□ -1.83
TRAIPQ9BWF2 MIR2276-201ENST00000516886 89 ntBASIC3.6□□□□□ -1.83
TRAIPQ9BWF2 RPL21P9-201ENST00000556149 474 ntBASIC3.6□□□□□ -1.83
TRAIPQ9BWF2 AL162424.1-201ENST00000602325 221 ntBASIC3.6□□□□□ -1.83
TRAIPQ9BWF2 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC3.6□□□□□ -1.83
TRAIPQ9BWF2 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.6□□□□□ -1.83
TRAIPQ9BWF2 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 Y_RNA.60-201ENST00000362831 98 ntBASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 RNA5SP374-201ENST00000362939 125 ntBASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 Y_RNA.277-201ENST00000364754 102 ntBASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 SNORA48.5-201ENST00000391143 135 ntBASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 RNU11-5P-201ENST00000391216 129 ntBASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 RNA5SP270-201ENST00000411361 118 ntBASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 RPL23AP7-203ENST00000449021 469 ntBASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 ATP5J2P3-201ENST00000451550 258 ntBASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 S100A11P2-201ENST00000467589 312 ntBASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 RNU6-191P-201ENST00000516295 94 ntBASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 AC107934.2-201ENST00000518653 310 ntBASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 CENPCP1-201ENST00000533085 2578 ntBASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
TRAIPQ9BWF2 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 Y_RNA.20-201ENST00000362479 113 ntBASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 RNU6-379P-201ENST00000363813 104 ntBASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 Y_RNA.341-201ENST00000365341 102 ntBASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 Y_RNA.590-201ENST00000410140 107 ntBASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 RNU2-61P-201ENST00000411069 191 ntBASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 AC060773.1-201ENST00000421698 310 ntBASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 AL353689.1-201ENST00000438895 199 ntBASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 RN7SL442P-201ENST00000473804 320 ntBASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 AC010409.1-201ENST00000487382 476 ntBASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 RNU6-1041P-201ENST00000516254 102 ntBASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 AC005357.1-201ENST00000588399 301 ntBASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 AL161431.1-201ENST00000618966 4205 ntBASIC3.58□□□□□ -1.84
TRAIPQ9BWF2 Y_RNA.65-201ENST00000362846 100 ntBASIC3.57□□□□□ -1.84
TRAIPQ9BWF2 AC016909.1-201ENST00000415916 166 ntBASIC3.57□□□□□ -1.84
TRAIPQ9BWF2 HSPE1P13-201ENST00000451143 297 ntBASIC3.57□□□□□ -1.84
TRAIPQ9BWF2 AL139109.1-201ENST00000455491 297 ntBASIC3.57□□□□□ -1.84
TRAIPQ9BWF2 HMGN1P18-201ENST00000457642 277 ntBASIC3.57□□□□□ -1.84
TRAIPQ9BWF2 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.57□□□□□ -1.84
TRAIPQ9BWF2 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.57□□□□□ -1.84
TRAIPQ9BWF2 RNA5SP380-201ENST00000517190 98 ntBASIC3.57□□□□□ -1.84
TRAIPQ9BWF2 AC022202.1-201ENST00000613515 211 ntBASIC3.57□□□□□ -1.84
TRAIPQ9BWF2 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
TRAIPQ9BWF2 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 MIR340-201ENST00000362125 95 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 snoU2-30.2-201ENST00000362805 70 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 RNA5SP493-201ENST00000364115 91 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 Y_RNA.275-201ENST00000364726 110 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 MIR128-1-201ENST00000384921 82 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 RPS26P55-201ENST00000471178 356 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 TRAPPC2P7-201ENST00000509650 231 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 RNU6-388P-201ENST00000517012 105 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 RNU6-389P-201ENST00000517048 105 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 MIR4438-201ENST00000585271 93 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 U2.15-201ENST00000611544 191 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 U2.16-201ENST00000613119 191 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 U2.12-201ENST00000613778 191 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 U2.20-201ENST00000613956 192 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 U2.9-201ENST00000615427 191 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 U2.11-201ENST00000616345 191 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 U2.2-201ENST00000616535 191 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 U2.3-201ENST00000617785 191 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 U2.19-201ENST00000618602 191 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 RNU2-1-201ENST00000618664 191 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 U2.6-201ENST00000619225 191 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 U2.5-201ENST00000619465 191 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 U2.10-201ENST00000620268 191 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 AC008264.2-201ENST00000610193 3731 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 AC108206.1-201ENST00000570186 4159 ntBASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
TRAIPQ9BWF2 UBE2WP1-201ENST00000362030 340 ntBASIC3.55□□□□□ -1.84
TRAIPQ9BWF2 RNU1-70P-201ENST00000362618 164 ntBASIC3.55□□□□□ -1.84
TRAIPQ9BWF2 SNORD114-6-201ENST00000364393 72 ntBASIC3.55□□□□□ -1.84
TRAIPQ9BWF2 RNU6-805P-201ENST00000365643 106 ntBASIC3.55□□□□□ -1.84
TRAIPQ9BWF2 SNORA11.4-201ENST00000408823 129 ntBASIC3.55□□□□□ -1.84
TRAIPQ9BWF2 RNA5SP229-201ENST00000410809 99 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 125.8 ms