Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CYCSP19-201ENST00000411715 316 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC140Q96MF4 AL121914.1-201ENST00000450188 156 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 U8.18-201ENST00000459285 133 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 RPL36AP21-201ENST00000490372 323 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 RNU7-200P-201ENST00000516105 62 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 RNU6-1146P-201ENST00000516282 102 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 RN7SKP282-201ENST00000516824 299 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 AC107934.2-201ENST00000518653 310 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 AC004832.5-201ENST00000608677 401 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC2.85□□□□□ -1.95
CCDC140Q96MF4 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
CCDC140Q96MF4 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC140Q96MF4 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC140Q96MF4 MIR200C-201ENST00000384980 68 ntBASIC2.84□□□□□ -1.95
CCDC140Q96MF4 MIR670-201ENST00000390142 98 ntBASIC2.84□□□□□ -1.95
CCDC140Q96MF4 AL031121.1-201ENST00000406553 254 ntBASIC2.84□□□□□ -1.95
CCDC140Q96MF4 RNU6ATAC-201ENST00000408749 126 ntBASIC2.84□□□□□ -1.95
CCDC140Q96MF4 MIR1278-201ENST00000408753 81 ntBASIC2.84□□□□□ -1.95
CCDC140Q96MF4 RNU6-437P-201ENST00000459408 95 ntBASIC2.84□□□□□ -1.95
CCDC140Q96MF4 RNU6-56P-201ENST00000516986 93 ntBASIC2.84□□□□□ -1.95
CCDC140Q96MF4 U6.73-201ENST00000619194 103 ntBASIC2.84□□□□□ -1.95
CCDC140Q96MF4 USP33-201ENST00000357428 4155 ntTSL 5 BASIC2.84□□□□□ -1.96
CCDC140Q96MF4 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.96
CCDC140Q96MF4 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
CCDC140Q96MF4 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC140Q96MF4 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC140Q96MF4 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC2.83□□□□□ -1.96
CCDC140Q96MF4 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC140Q96MF4 RNU4-41P-201ENST00000364426 143 ntBASIC2.83□□□□□ -1.96
CCDC140Q96MF4 RNA5SP467-201ENST00000391274 118 ntBASIC2.83□□□□□ -1.96
CCDC140Q96MF4 AL606845.1-201ENST00000404881 255 ntBASIC2.83□□□□□ -1.96
CCDC140Q96MF4 EBAG9P1-201ENST00000418955 543 ntBASIC2.83□□□□□ -1.96
CCDC140Q96MF4 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC140Q96MF4 AL357552.1-201ENST00000445254 415 ntBASIC2.83□□□□□ -1.96
CCDC140Q96MF4 AL392103.1-201ENST00000447000 198 ntBASIC2.83□□□□□ -1.96
CCDC140Q96MF4 RNU6-561P-201ENST00000516222 102 ntBASIC2.83□□□□□ -1.96
CCDC140Q96MF4 RNU6-789P-201ENST00000517105 102 ntBASIC2.83□□□□□ -1.96
CCDC140Q96MF4 AC109810.1-201ENST00000534066 224 ntBASIC2.83□□□□□ -1.96
CCDC140Q96MF4 NDUFA5P6-201ENST00000542110 379 ntBASIC2.83□□□□□ -1.96
CCDC140Q96MF4 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC140Q96MF4 AL929325.1-201ENST00000603096 117 ntBASIC2.83□□□□□ -1.96
CCDC140Q96MF4 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC140Q96MF4 AL449363.1-201ENST00000617815 186 ntBASIC2.83□□□□□ -1.96
CCDC140Q96MF4 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC140Q96MF4 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC140Q96MF4 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC140Q96MF4 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC140Q96MF4 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
CCDC140Q96MF4 MFSD8-236ENST00000641509 4050 ntBASIC2.82□□□□□ -1.96
CCDC140Q96MF4 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC140Q96MF4 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC140Q96MF4 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC140Q96MF4 snoU2-30.2-201ENST00000362805 70 ntBASIC2.82□□□□□ -1.96
CCDC140Q96MF4 RNU1-91P-201ENST00000364746 163 ntBASIC2.82□□□□□ -1.96
CCDC140Q96MF4 RNU6-449P-201ENST00000383914 107 ntBASIC2.82□□□□□ -1.96
CCDC140Q96MF4 RNA5SP171-201ENST00000391071 115 ntBASIC2.82□□□□□ -1.96
CCDC140Q96MF4 Y_RNA.621-201ENST00000411065 96 ntBASIC2.82□□□□□ -1.96
CCDC140Q96MF4 EDDM3CP-201ENST00000415977 425 ntBASIC2.82□□□□□ -1.96
CCDC140Q96MF4 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC140Q96MF4 RPS4XP11-201ENST00000446897 772 ntBASIC2.82□□□□□ -1.96
CCDC140Q96MF4 RNU7-26P-201ENST00000458980 63 ntBASIC2.82□□□□□ -1.96
CCDC140Q96MF4 MIR5688-201ENST00000580619 83 ntBASIC2.82□□□□□ -1.96
CCDC140Q96MF4 AC022202.1-201ENST00000613515 211 ntBASIC2.82□□□□□ -1.96
CCDC140Q96MF4 AC244205.2-202ENST00000635781 342 ntBASIC2.82□□□□□ -1.96
CCDC140Q96MF4 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC140Q96MF4 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC140Q96MF4 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC140Q96MF4 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC140Q96MF4 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC140Q96MF4 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC140Q96MF4 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC140Q96MF4 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC140Q96MF4 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC140Q96MF4 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC140Q96MF4 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC140Q96MF4 Y_RNA.99-201ENST00000363138 105 ntBASIC2.81□□□□□ -1.96
CCDC140Q96MF4 RNU4-84P-201ENST00000364200 139 ntBASIC2.81□□□□□ -1.96
CCDC140Q96MF4 RNA5SP51-201ENST00000364750 119 ntBASIC2.81□□□□□ -1.96
CCDC140Q96MF4 SNORA72-201ENST00000384339 132 ntBASIC2.81□□□□□ -1.96
CCDC140Q96MF4 Z98941.1-201ENST00000407764 100 ntBASIC2.81□□□□□ -1.96
CCDC140Q96MF4 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC140Q96MF4 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC140Q96MF4 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.81□□□□□ -1.96
CCDC140Q96MF4 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC140Q96MF4 LARP7P3-201ENST00000579888 337 ntBASIC2.81□□□□□ -1.96
CCDC140Q96MF4 AC073413.2-201ENST00000604332 360 ntBASIC2.81□□□□□ -1.96
CCDC140Q96MF4 U4atac.1-201ENST00000618345 95 ntBASIC2.81□□□□□ -1.96
CCDC140Q96MF4 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC140Q96MF4 AC073346.2-201ENST00000624724 2058 ntBASIC2.81□□□□□ -1.96
CCDC140Q96MF4 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC140Q96MF4 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
CCDC140Q96MF4 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
CCDC140Q96MF4 AC093010.3-201ENST00000570269 15214 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
CCDC140Q96MF4 MIR423-201ENST00000362201 94 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 RNU1-35P-201ENST00000362782 153 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 RNA5SP42-201ENST00000364278 115 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 RNU6-160P-201ENST00000384591 107 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 MIR23A-201ENST00000385245 73 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms