Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 FER-210ENST00000628534 558 ntTSL 5 BASIC0.74□□□□□ -2.29
LMX1AQ8TE12 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
LMX1AQ8TE12 Y_RNA.123-201ENST00000363338 102 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 Y_RNA.381-201ENST00000365666 102 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 SNORD116-8-201ENST00000384365 95 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 RNU6-417P-201ENST00000384712 107 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 MIR514A2-201ENST00000385131 88 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 MIR514A3-201ENST00000385132 88 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 MIR549A-201ENST00000385268 96 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.73□□□□□ -2.29
LMX1AQ8TE12 Y_RNA.582-201ENST00000391023 95 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 RNA5SP467-201ENST00000391274 118 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 MIR450B-201ENST00000401182 78 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 RNA5SP504-201ENST00000410676 117 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 RNU6-325P-201ENST00000411132 105 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.73□□□□□ -2.29
LMX1AQ8TE12 AL606517.2-201ENST00000442855 241 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 RNU7-57P-201ENST00000459540 60 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 RNU6-221P-201ENST00000459541 99 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 RNU6-1208P-201ENST00000459588 107 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 RPL23AP75-201ENST00000491601 451 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.73□□□□□ -2.29
LMX1AQ8TE12 SNORA31.10-201ENST00000516482 106 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 RNU6-1038P-201ENST00000516516 104 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 RNU6-405P-201ENST00000516637 110 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.73□□□□□ -2.29
LMX1AQ8TE12 AC104576.1-201ENST00000524225 88 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.73□□□□□ -2.29
LMX1AQ8TE12 AC025423.5-201ENST00000550230 219 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.73□□□□□ -2.29
LMX1AQ8TE12 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.73□□□□□ -2.29
LMX1AQ8TE12 AC073648.5-201ENST00000603502 305 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 AC092747.3-201ENST00000603769 301 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 AC021506.2-201ENST00000612354 169 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 FAM157A-202ENST00000615155 405 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 AC137590.2-201ENST00000619709 240 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.73□□□□□ -2.29
LMX1AQ8TE12 SCARNA4-201ENST00000629045 128 ntBASIC0.73□□□□□ -2.29
LMX1AQ8TE12 SNORA25-201ENST00000384384 134 ntBASIC0.72□□□□□ -2.29
LMX1AQ8TE12 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.72□□□□□ -2.29
LMX1AQ8TE12 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.72□□□□□ -2.29
LMX1AQ8TE12 MTCO2P16-201ENST00000436962 677 ntBASIC0.72□□□□□ -2.29
LMX1AQ8TE12 RPS3AP17-201ENST00000472594 777 ntBASIC0.72□□□□□ -2.29
LMX1AQ8TE12 BET1P1-201ENST00000482276 359 ntBASIC0.72□□□□□ -2.29
LMX1AQ8TE12 RNU6-835P-201ENST00000516974 104 ntBASIC0.72□□□□□ -2.29
LMX1AQ8TE12 RNU6-165P-201ENST00000517170 99 ntBASIC0.72□□□□□ -2.29
LMX1AQ8TE12 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
LMX1AQ8TE12 AC022217.4-201ENST00000604389 163 ntBASIC0.72□□□□□ -2.29
LMX1AQ8TE12 AL121757.2-201ENST00000611223 313 ntBASIC0.72□□□□□ -2.29
LMX1AQ8TE12 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.72□□□□□ -2.29
LMX1AQ8TE12 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.72□□□□□ -2.29
LMX1AQ8TE12 Z69908.1-201ENST00000622603 247 ntBASIC0.72□□□□□ -2.29
LMX1AQ8TE12 snoZ196.1-201ENST00000625269 89 ntBASIC0.72□□□□□ -2.29
LMX1AQ8TE12 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.72□□□□□ -2.29
LMX1AQ8TE12 RNU6-1305P-201ENST00000364353 104 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 RNU6-245P-201ENST00000384020 107 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 RNY1P4-201ENST00000384595 115 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 Y_RNA.553-201ENST00000384670 102 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 RNU6-1031P-201ENST00000384773 107 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 SNORA12.1-201ENST00000390873 148 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 RNA5SP109-201ENST00000391010 116 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 AL356776.1-201ENST00000406574 447 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 RNU6-648P-201ENST00000410190 107 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 POLR2J4-204ENST00000418424 324 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 TIMM9P3-201ENST00000428659 274 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 MTCO1P19-201ENST00000443487 500 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 NDUFB4P10-201ENST00000452541 359 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 RNU6-956P-201ENST00000458868 103 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 RPL39P38-201ENST00000467018 153 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 RN7SKP298-201ENST00000515950 94 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 SNORA19.2-201ENST00000516013 114 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 RN7SKP88-201ENST00000516847 250 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 RNU7-128P-201ENST00000517247 62 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 MTND1P5-201ENST00000517906 940 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC0.71□□□□□ -2.3
LMX1AQ8TE12 MIR4661-201ENST00000582720 75 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 AL929325.1-201ENST00000603096 117 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 Z99497.2-201ENST00000603634 310 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 AL590095.2-201ENST00000604136 117 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 AL022345.2-201ENST00000606307 135 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 BX284668.6-201ENST00000606899 438 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 AL357078.3-201ENST00000607528 618 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 AC092807.2-201ENST00000609367 243 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 AL133215.3-201ENST00000609801 448 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 7SK.8-201ENST00000612110 250 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 AC040896.1-201ENST00000613819 479 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 7SK.11-201ENST00000615477 250 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.71□□□□□ -2.3
LMX1AQ8TE12 7SK.13-201ENST00000622040 250 ntBASIC0.71□□□□□ -2.3
LMX1AQ8TE12 SNORD50.1-201ENST00000362987 71 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 SNORD113-7-201ENST00000363762 77 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 Y_RNA.205-201ENST00000364128 113 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 RNU6-1322P-201ENST00000364309 107 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 RNU6-522P-201ENST00000364497 107 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 RNU6-1240P-201ENST00000365155 104 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 RNU4-66P-201ENST00000365199 138 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 SNORA69-201ENST00000383895 132 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 RNU6-950P-201ENST00000384651 107 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 MIR19B1-201ENST00000384829 87 ntBASIC0.7□□□□□ -2.3
LMX1AQ8TE12 MIR487A-201ENST00000385009 80 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms