Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 Y_RNA.683-201ENST00000516508 93 ntBASIC2.15□□□□□ -2.07
COL28A1Q2UY09 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.15□□□□□ -2.07
COL28A1Q2UY09 AC093023.1-201ENST00000547375 507 ntBASIC2.15□□□□□ -2.07
COL28A1Q2UY09 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.15□□□□□ -2.07
COL28A1Q2UY09 MIR4753-201ENST00000585119 83 ntBASIC2.15□□□□□ -2.07
COL28A1Q2UY09 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.15□□□□□ -2.07
COL28A1Q2UY09 MIR340-201ENST00000362125 95 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 RNU6-545P-201ENST00000362681 104 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 RNU6-1164P-201ENST00000364428 107 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 Y_RNA.314-201ENST00000365114 102 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 RNU1-51P-201ENST00000365345 176 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 RNU6-1145P-201ENST00000384246 107 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 Y_RNA.496-201ENST00000384444 101 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 RNU6-160P-201ENST00000384591 107 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 MIR329-1-201ENST00000385028 80 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 SNORA17.3-201ENST00000391159 129 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 AL023284.1-201ENST00000403956 276 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 SNORA11.4-201ENST00000408823 129 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.14□□□□□ -2.07
COL28A1Q2UY09 AC074290.1-201ENST00000448883 135 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 U8.22-201ENST00000459141 133 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 AC005840.1-201ENST00000498412 377 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 AC067942.3-201ENST00000512025 362 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 TRMT112P2-201ENST00000512910 132 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 RN7SKP49-201ENST00000516675 260 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.14□□□□□ -2.07
COL28A1Q2UY09 AL138825.1-201ENST00000618587 192 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 uc_338.22-201ENST00000622722 187 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 LINC02555-201ENST00000563933 1951 ntBASIC2.14□□□□□ -2.07
COL28A1Q2UY09 RNU6-1301P-201ENST00000362724 104 ntBASIC2.13□□□□□ -2.07
COL28A1Q2UY09 Y_RNA.132-201ENST00000363421 102 ntBASIC2.13□□□□□ -2.07
COL28A1Q2UY09 Y_RNA.224-201ENST00000364308 111 ntBASIC2.13□□□□□ -2.07
COL28A1Q2UY09 RNA5SP37-201ENST00000365420 130 ntBASIC2.13□□□□□ -2.07
COL28A1Q2UY09 RNU6-975P-201ENST00000384296 105 ntBASIC2.13□□□□□ -2.07
COL28A1Q2UY09 SNORA51.11-201ENST00000384442 131 ntBASIC2.13□□□□□ -2.07
COL28A1Q2UY09 MIR518A2-201ENST00000384966 87 ntBASIC2.13□□□□□ -2.07
COL28A1Q2UY09 RNU6-1001P-201ENST00000411265 100 ntBASIC2.13□□□□□ -2.07
COL28A1Q2UY09 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.13□□□□□ -2.07
COL28A1Q2UY09 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.13□□□□□ -2.07
COL28A1Q2UY09 AC010531.2-201ENST00000465012 153 ntBASIC2.13□□□□□ -2.07
COL28A1Q2UY09 AC079804.2-201ENST00000490376 200 ntBASIC2.13□□□□□ -2.07
COL28A1Q2UY09 RNU7-193P-201ENST00000516723 65 ntBASIC2.13□□□□□ -2.07
COL28A1Q2UY09 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.13□□□□□ -2.07
COL28A1Q2UY09 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.13□□□□□ -2.07
COL28A1Q2UY09 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.13□□□□□ -2.07
COL28A1Q2UY09 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.13□□□□□ -2.07
COL28A1Q2UY09 MTND5P35-201ENST00000557537 1720 ntBASIC2.13□□□□□ -2.07
COL28A1Q2UY09 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
COL28A1Q2UY09 RNU4-76P-201ENST00000364509 141 ntBASIC2.12□□□□□ -2.07
COL28A1Q2UY09 RNU6-1235P-201ENST00000384559 107 ntBASIC2.12□□□□□ -2.07
COL28A1Q2UY09 RNA5SP465-201ENST00000391195 109 ntBASIC2.12□□□□□ -2.07
COL28A1Q2UY09 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
COL28A1Q2UY09 Y_RNA.605-201ENST00000410577 105 ntBASIC2.12□□□□□ -2.07
COL28A1Q2UY09 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.12□□□□□ -2.07
COL28A1Q2UY09 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.12□□□□□ -2.07
COL28A1Q2UY09 AL445305.1-201ENST00000432577 575 ntBASIC2.12□□□□□ -2.07
COL28A1Q2UY09 RPS15AP28-201ENST00000435088 386 ntBASIC2.12□□□□□ -2.07
COL28A1Q2UY09 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.12□□□□□ -2.07
COL28A1Q2UY09 RNU6-498P-201ENST00000459468 107 ntBASIC2.12□□□□□ -2.07
COL28A1Q2UY09 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.12□□□□□ -2.07
COL28A1Q2UY09 AC023442.1-201ENST00000531247 422 ntBASIC2.12□□□□□ -2.07
COL28A1Q2UY09 AL442163.3-201ENST00000554110 156 ntBASIC2.12□□□□□ -2.07
COL28A1Q2UY09 MIR4529-201ENST00000578110 78 ntBASIC2.12□□□□□ -2.07
COL28A1Q2UY09 VN1R91P-201ENST00000594377 169 ntBASIC2.12□□□□□ -2.07
COL28A1Q2UY09 MZT1P2-201ENST00000604387 248 ntBASIC2.12□□□□□ -2.07
COL28A1Q2UY09 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.12□□□□□ -2.07
COL28A1Q2UY09 AL078596.1-201ENST00000624856 447 ntBASIC2.12□□□□□ -2.07
COL28A1Q2UY09 MIR4272-201ENST00000635924 64 ntBASIC2.12□□□□□ -2.07
COL28A1Q2UY09 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.12□□□□□ -2.07
COL28A1Q2UY09 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.11□□□□□ -2.07
COL28A1Q2UY09 RNU1-58P-201ENST00000362413 163 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 Y_RNA.39-201ENST00000362620 98 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 U3.8-201ENST00000363675 217 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 RNU6-879P-201ENST00000364328 108 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 RNU6-318P-201ENST00000384283 103 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 RNY3P4-201ENST00000384428 101 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 MIR583-201ENST00000384846 75 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 AL033519.2-201ENST00000403958 392 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 SNORD23.1-201ENST00000408212 104 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.11□□□□□ -2.07
COL28A1Q2UY09 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.11□□□□□ -2.07
COL28A1Q2UY09 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.11□□□□□ -2.07
COL28A1Q2UY09 AL163540.1-201ENST00000485382 386 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 AC074133.1-201ENST00000515696 183 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 RNU6-475P-201ENST00000516073 104 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 RNU6-948P-201ENST00000516374 107 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 RNU6-856P-201ENST00000516959 98 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 AC022868.1-201ENST00000517767 391 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 MIR5007-201ENST00000583098 95 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.11□□□□□ -2.07
COL28A1Q2UY09 AC078899.2-201ENST00000595282 212 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 AL359821.1-201ENST00000605519 182 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 U2.1-201ENST00000618978 145 ntBASIC2.11□□□□□ -2.07
COL28A1Q2UY09 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.11□□□□□ -2.07
COL28A1Q2UY09 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
COL28A1Q2UY09 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
COL28A1Q2UY09 MIR369-201ENST00000362155 70 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 Y_RNA.128-201ENST00000363391 112 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 RNU6-1305P-201ENST00000364353 104 ntBASIC2.1□□□□□ -2.07
COL28A1Q2UY09 Y_RNA.415-201ENST00000384012 112 ntBASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 127.1 ms