Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 Y_RNA.83-201ENST00000363005 113 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RNU6-629P-201ENST00000384061 103 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RNU6-708P-201ENST00000384217 107 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 Y_RNA.464-201ENST00000384282 110 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RNU6-125P-201ENST00000384505 107 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RPS29P13-201ENST00000402041 169 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RNU2-43P-201ENST00000410306 190 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 SNORD56-201ENST00000413522 71 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 AC096920.1-201ENST00000423991 241 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
COL4A4P53420 AC013470.1-201ENST00000453438 462 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RPS29P29-201ENST00000456396 171 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 snoU13.30-201ENST00000458951 104 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 Y_RNA.644-201ENST00000459006 113 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC1.67□□□□□ -2.14
COL4A4P53420 RN7SL274P-201ENST00000492268 272 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RNU1-61P-201ENST00000516107 151 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 Y_RNA.674-201ENST00000516362 113 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RNU6-1012P-201ENST00000516606 109 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RN7SKP49-201ENST00000516675 260 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RNU6-914P-201ENST00000516749 109 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RNU7-4P-201ENST00000516961 62 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.67□□□□□ -2.14
COL4A4P53420 DEFB108E-201ENST00000524692 240 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC1.67□□□□□ -2.14
COL4A4P53420 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC1.67□□□□□ -2.14
COL4A4P53420 Z83818.1-201ENST00000603584 150 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 BX284668.6-201ENST00000606899 438 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.67□□□□□ -2.14
COL4A4P53420 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
COL4A4P53420 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC1.67□□□□□ -2.14
COL4A4P53420 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
COL4A4P53420 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.67□□□□□ -2.14
COL4A4P53420 AC007785.2-201ENST00000598627 1916 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC1.67□□□□□ -2.14
COL4A4P53420 Y_RNA.54-201ENST00000362766 105 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RNA5SP393-201ENST00000363423 117 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RNU6-1303P-201ENST00000364841 107 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RNU6-886P-201ENST00000384319 105 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 Y_RNA.541-201ENST00000384640 113 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 AL513475.1-201ENST00000406602 315 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.67□□□□□ -2.14
COL4A4P53420 SUMO1P4-201ENST00000429430 302 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 AC092573.2-201ENST00000434546 243 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 AC098831.1-201ENST00000440661 216 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 AC009474.2-201ENST00000451383 136 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RPS29P27-201ENST00000463711 170 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RPL21P104-201ENST00000464143 478 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.67□□□□□ -2.14
COL4A4P53420 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.67□□□□□ -2.14
COL4A4P53420 AC084851.1-201ENST00000529105 249 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 AC010186.2-204ENST00000537668 439 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.67□□□□□ -2.14
COL4A4P53420 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.67□□□□□ -2.14
COL4A4P53420 AC130454.1-201ENST00000622948 401 ntBASIC1.67□□□□□ -2.14
COL4A4P53420 RNU1-76P-201ENST00000362903 159 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 RNU6-461P-201ENST00000364195 107 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 RNU1-93P-201ENST00000364704 169 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 Y_RNA.297-201ENST00000364950 91 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 Y_RNA.439-201ENST00000384119 94 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 RNU6-378P-201ENST00000384324 107 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 RNU6-817P-201ENST00000391083 104 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 SNORA40C-201ENST00000391285 128 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 PCNPP3-201ENST00000393579 471 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 AC092423.1-201ENST00000430165 186 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 RPL26P6-201ENST00000440913 438 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 RNU7-120P-201ENST00000459334 63 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 AC087588.1-201ENST00000462203 316 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 AC067942.3-201ENST00000512025 362 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 SERF1AP1-201ENST00000514575 187 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 SCARNA24.2-201ENST00000516968 130 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 RNA5SP471-201ENST00000516971 106 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 RNU6-1212P-201ENST00000517023 104 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 RNU6-1315P-201ENST00000517187 99 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.66□□□□□ -2.14
COL4A4P53420 AC034114.1-201ENST00000520293 285 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 UTP23-205ENST00000520733 369 ntTSL 3 BASIC1.66□□□□□ -2.14
COL4A4P53420 MRPS36P4-201ENST00000534436 298 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 AC136932.1-201ENST00000574771 208 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 MIR5701-3-201ENST00000578890 82 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 MIR5701-1-201ENST00000585138 82 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 SNRPGP15-201ENST00000600149 222 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 AC004852.3-201ENST00000614131 326 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 MIR5701-2-201ENST00000615634 82 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 MIR376A1-201ENST00000616574 68 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 RMST_4.1-201ENST00000616886 107 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 AL353770.2-201ENST00000620024 78 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 AC006065.5-201ENST00000623427 349 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 Z99571.1-201ENST00000636677 394 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 AC132825.6-201ENST00000638861 357 ntBASIC1.66□□□□□ -2.14
COL4A4P53420 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
COL4A4P53420 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.14
COL4A4P53420 MIR412-201ENST00000362142 91 ntBASIC1.65□□□□□ -2.15
COL4A4P53420 Y_RNA.44-201ENST00000362676 108 ntBASIC1.65□□□□□ -2.15
COL4A4P53420 RNU6-428P-201ENST00000362942 107 ntBASIC1.65□□□□□ -2.15
COL4A4P53420 SNORD50.1-201ENST00000362987 71 ntBASIC1.65□□□□□ -2.15
COL4A4P53420 RNU6-173P-201ENST00000364215 104 ntBASIC1.65□□□□□ -2.15
COL4A4P53420 RNU6-384P-201ENST00000364900 104 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms