Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MIR208A-201ENST00000362287 71 ntBASIC3.69□□□□□ -1.82
MSX1P28360 SNORD46.1-201ENST00000364139 104 ntBASIC3.69□□□□□ -1.82
MSX1P28360 RNU6-1292P-201ENST00000383856 107 ntBASIC3.69□□□□□ -1.82
MSX1P28360 RNU6-418P-201ENST00000384035 107 ntBASIC3.69□□□□□ -1.82
MSX1P28360 SNORA51.5-201ENST00000384126 131 ntBASIC3.69□□□□□ -1.82
MSX1P28360 MIR513A2-201ENST00000385249 127 ntBASIC3.69□□□□□ -1.82
MSX1P28360 SNORA26.2-201ENST00000390922 122 ntBASIC3.69□□□□□ -1.82
MSX1P28360 RNU2-37P-201ENST00000410695 177 ntBASIC3.69□□□□□ -1.82
MSX1P28360 HMGN2P7-201ENST00000456186 273 ntBASIC3.69□□□□□ -1.82
MSX1P28360 RPS26P15-201ENST00000488067 348 ntBASIC3.69□□□□□ -1.82
MSX1P28360 SNORA31.21-201ENST00000517180 77 ntBASIC3.69□□□□□ -1.82
MSX1P28360 AC103810.1-201ENST00000579873 453 ntBASIC3.69□□□□□ -1.82
MSX1P28360 AL606490.9-201ENST00000603331 271 ntBASIC3.69□□□□□ -1.82
MSX1P28360 JPX_2.1-201ENST00000614161 69 ntBASIC3.69□□□□□ -1.82
MSX1P28360 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
MSX1P28360 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
MSX1P28360 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.69□□□□□ -1.82
MSX1P28360 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
MSX1P28360 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
MSX1P28360 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
MSX1P28360 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
MSX1P28360 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
MSX1P28360 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.68□□□□□ -1.82
MSX1P28360 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
MSX1P28360 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.68□□□□□ -1.82
MSX1P28360 SNORA71.3-201ENST00000362582 128 ntBASIC3.68□□□□□ -1.82
MSX1P28360 SNORA1-201ENST00000384107 130 ntBASIC3.68□□□□□ -1.82
MSX1P28360 Y_RNA.549-201ENST00000384657 102 ntBASIC3.68□□□□□ -1.82
MSX1P28360 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
MSX1P28360 AL133547.1-201ENST00000448546 220 ntBASIC3.68□□□□□ -1.82
MSX1P28360 RNU7-170P-201ENST00000459303 61 ntBASIC3.68□□□□□ -1.82
MSX1P28360 PPIAP15-201ENST00000479662 484 ntBASIC3.68□□□□□ -1.82
MSX1P28360 AC093663.1-201ENST00000497190 394 ntBASIC3.68□□□□□ -1.82
MSX1P28360 AC097462.1-201ENST00000514125 324 ntBASIC3.68□□□□□ -1.82
MSX1P28360 RNU7-172P-201ENST00000517125 64 ntBASIC3.68□□□□□ -1.82
MSX1P28360 MIR5685-201ENST00000579080 79 ntBASIC3.68□□□□□ -1.82
MSX1P28360 MIR4438-201ENST00000585271 93 ntBASIC3.68□□□□□ -1.82
MSX1P28360 AC107294.3-201ENST00000609211 526 ntBASIC3.68□□□□□ -1.82
MSX1P28360 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.68□□□□□ -1.82
MSX1P28360 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.68□□□□□ -1.82
MSX1P28360 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
MSX1P28360 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.68□□□□□ -1.82
MSX1P28360 AC002546.1-201ENST00000588041 2504 ntBASIC3.68□□□□□ -1.82
MSX1P28360 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
MSX1P28360 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
MSX1P28360 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
MSX1P28360 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.67□□□□□ -1.82
MSX1P28360 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.67□□□□□ -1.82
MSX1P28360 MAPK10-253ENST00000641010 4072 ntBASIC3.67□□□□□ -1.82
MSX1P28360 RNU6-944P-201ENST00000364023 107 ntBASIC3.67□□□□□ -1.82
MSX1P28360 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.67□□□□□ -1.82
MSX1P28360 RNU6-1131P-201ENST00000364955 107 ntBASIC3.67□□□□□ -1.82
MSX1P28360 RNU6-1274P-201ENST00000384557 107 ntBASIC3.67□□□□□ -1.82
MSX1P28360 Y_RNA.558-201ENST00000384685 113 ntBASIC3.67□□□□□ -1.82
MSX1P28360 MIR449B-201ENST00000384995 97 ntBASIC3.67□□□□□ -1.82
MSX1P28360 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.67□□□□□ -1.82
MSX1P28360 RN7SL807P-201ENST00000470923 297 ntBASIC3.67□□□□□ -1.82
MSX1P28360 COX6CP6-201ENST00000490840 228 ntBASIC3.67□□□□□ -1.82
MSX1P28360 RPS29P21-201ENST00000496272 170 ntBASIC3.67□□□□□ -1.82
MSX1P28360 RNU2-34P-201ENST00000516534 121 ntBASIC3.67□□□□□ -1.82
MSX1P28360 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.67□□□□□ -1.82
MSX1P28360 AL360157.1-201ENST00000565962 87 ntBASIC3.67□□□□□ -1.82
MSX1P28360 MIR4765-201ENST00000585007 77 ntBASIC3.67□□□□□ -1.82
MSX1P28360 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.67□□□□□ -1.82
MSX1P28360 CR392039.5-201ENST00000623201 510 ntBASIC3.67□□□□□ -1.82
MSX1P28360 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
MSX1P28360 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
MSX1P28360 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
MSX1P28360 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
MSX1P28360 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.66□□□□□ -1.82
MSX1P28360 MIR423-201ENST00000362201 94 ntBASIC3.66□□□□□ -1.82
MSX1P28360 RNU6-525P-201ENST00000363685 104 ntBASIC3.66□□□□□ -1.82
MSX1P28360 Y_RNA.388-201ENST00000383919 113 ntBASIC3.66□□□□□ -1.82
MSX1P28360 RNA5SP252-201ENST00000391131 119 ntBASIC3.66□□□□□ -1.82
MSX1P28360 Z98941.1-201ENST00000407764 100 ntBASIC3.66□□□□□ -1.82
MSX1P28360 AC007064.1-201ENST00000412238 351 ntBASIC3.66□□□□□ -1.82
MSX1P28360 DBIP2-201ENST00000419076 262 ntBASIC3.66□□□□□ -1.82
MSX1P28360 AC025554.1-201ENST00000505641 188 ntBASIC3.66□□□□□ -1.82
MSX1P28360 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.66□□□□□ -1.82
MSX1P28360 MIR6868-201ENST00000611215 58 ntBASIC3.66□□□□□ -1.82
MSX1P28360 U6.73-201ENST00000619194 103 ntBASIC3.66□□□□□ -1.82
MSX1P28360 MIR6500-201ENST00000622700 86 ntBASIC3.66□□□□□ -1.82
MSX1P28360 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
MSX1P28360 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.66□□□□□ -1.82
MSX1P28360 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
MSX1P28360 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.66□□□□□ -1.82
MSX1P28360 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
MSX1P28360 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
MSX1P28360 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.65□□□□□ -1.82
MSX1P28360 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
MSX1P28360 RNU6-438P-201ENST00000365561 103 ntBASIC3.65□□□□□ -1.83
MSX1P28360 RNU6-1014P-201ENST00000383940 103 ntBASIC3.65□□□□□ -1.83
MSX1P28360 RNU6-1113P-201ENST00000384348 107 ntBASIC3.65□□□□□ -1.83
MSX1P28360 GOT2P5-201ENST00000433995 546 ntBASIC3.65□□□□□ -1.83
MSX1P28360 RNA5SP112-201ENST00000515937 99 ntBASIC3.65□□□□□ -1.83
MSX1P28360 SNORA40.13-201ENST00000516379 120 ntBASIC3.65□□□□□ -1.83
MSX1P28360 RNA5SP281-201ENST00000516504 135 ntBASIC3.65□□□□□ -1.83
MSX1P28360 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.65□□□□□ -1.83
MSX1P28360 RNU6-94P-201ENST00000607728 107 ntBASIC3.65□□□□□ -1.83
MSX1P28360 AL137067.1-201ENST00000615933 120 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 172.5 ms