Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.53□□□□□ -2
HOXD9P28356 MICF-203ENST00000432679 129 ntBASIC2.53□□□□□ -2
HOXD9P28356 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.53□□□□□ -2
HOXD9P28356 AC091179.3-201ENST00000474761 144 ntBASIC2.53□□□□□ -2
HOXD9P28356 AL121594.1-201ENST00000475906 575 ntBASIC2.53□□□□□ -2
HOXD9P28356 RNA5SP385-201ENST00000515947 110 ntBASIC2.53□□□□□ -2
HOXD9P28356 RNU6-182P-201ENST00000516970 105 ntBASIC2.53□□□□□ -2
HOXD9P28356 SCARNA3-201ENST00000517097 143 ntBASIC2.53□□□□□ -2
HOXD9P28356 RRN3P3-201ENST00000549207 578 ntBASIC2.53□□□□□ -2
HOXD9P28356 EIF4A1P12-201ENST00000551910 141 ntBASIC2.53□□□□□ -2
HOXD9P28356 AC018448.1-201ENST00000552843 316 ntBASIC2.53□□□□□ -2
HOXD9P28356 AC091544.4-201ENST00000555268 342 ntBASIC2.53□□□□□ -2
HOXD9P28356 AC026470.2-201ENST00000561492 181 ntBASIC2.53□□□□□ -2
HOXD9P28356 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.53□□□□□ -2
HOXD9P28356 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.53□□□□□ -2
HOXD9P28356 AC013412.1-201ENST00000610687 192 ntBASIC2.53□□□□□ -2
HOXD9P28356 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.53□□□□□ -2
HOXD9P28356 MIR7157-201ENST00000635801 60 ntBASIC2.53□□□□□ -2
HOXD9P28356 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
HOXD9P28356 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXD9P28356 MIR410-201ENST00000362222 80 ntBASIC2.52□□□□□ -2.01
HOXD9P28356 RNU6-655P-201ENST00000362858 107 ntBASIC2.52□□□□□ -2.01
HOXD9P28356 Y_RNA.136-201ENST00000363444 102 ntBASIC2.52□□□□□ -2.01
HOXD9P28356 Y_RNA.446-201ENST00000384178 104 ntBASIC2.52□□□□□ -2.01
HOXD9P28356 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
HOXD9P28356 RNA5SP508-201ENST00000411327 119 ntBASIC2.52□□□□□ -2.01
HOXD9P28356 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXD9P28356 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXD9P28356 RPL36AP48-201ENST00000485521 314 ntBASIC2.52□□□□□ -2.01
HOXD9P28356 RNA5SP112-201ENST00000515937 99 ntBASIC2.52□□□□□ -2.01
HOXD9P28356 SNORA81.3-201ENST00000517283 198 ntBASIC2.52□□□□□ -2.01
HOXD9P28356 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXD9P28356 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXD9P28356 AC008749.1-201ENST00000597650 306 ntBASIC2.52□□□□□ -2.01
HOXD9P28356 AC037487.3-201ENST00000606668 112 ntBASIC2.52□□□□□ -2.01
HOXD9P28356 AL590808.1-201ENST00000618696 141 ntBASIC2.52□□□□□ -2.01
HOXD9P28356 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXD9P28356 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HOXD9P28356 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.51□□□□□ -2.01
HOXD9P28356 UBE2WP1-201ENST00000362030 340 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 RNU6-486P-201ENST00000363116 107 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 U3.9-201ENST00000363823 204 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 Y_RNA.200-201ENST00000364018 102 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 Y_RNA.274-201ENST00000364714 101 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 RNU6-209P-201ENST00000384118 107 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 RNU6-1310P-201ENST00000384153 107 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 MIR549A-201ENST00000385268 96 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 RPL19P1-201ENST00000411635 428 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 AC097463.2-201ENST00000421074 142 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 MTND5P15-201ENST00000434246 349 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 IFNA11P-201ENST00000446352 526 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 UQCRBP2-201ENST00000447827 297 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 RNU6-625P-201ENST00000459412 107 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 AC234781.5-201ENST00000508429 271 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 AC008413.1-201ENST00000511864 177 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 AC055872.1-201ENST00000570978 278 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXD9P28356 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXD9P28356 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.51□□□□□ -2.01
HOXD9P28356 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
HOXD9P28356 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
HOXD9P28356 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.5□□□□□ -2.01
HOXD9P28356 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.5□□□□□ -2.01
HOXD9P28356 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.5□□□□□ -2.01
HOXD9P28356 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
HOXD9P28356 Y_RNA.29-201ENST00000362570 113 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 Y_RNA.331-201ENST00000365267 102 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 Y_RNA.498-201ENST00000384460 102 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
HOXD9P28356 MIR1298-201ENST00000408783 112 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 RAB28P5-201ENST00000427490 651 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 AC104389.3-201ENST00000445629 235 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 AC005042.3-201ENST00000453230 174 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 AC112771.1-201ENST00000463581 102 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.5□□□□□ -2.01
HOXD9P28356 COX6CP14-201ENST00000469580 174 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 RN7SL636P-201ENST00000497504 294 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 RNU6-344P-201ENST00000516635 111 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 MIR4282-201ENST00000583613 67 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 AC103810.6-201ENST00000606708 136 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 TCL6_2.1-201ENST00000615162 119 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
HOXD9P28356 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.5□□□□□ -2.01
HOXD9P28356 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
HOXD9P28356 AC069528.2-201ENST00000624849 1991 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 MAPK10-266ENST00000641066 6555 ntBASIC2.5□□□□□ -2.01
HOXD9P28356 AC135776.4-201ENST00000624300 1904 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 Y_RNA.76-201ENST00000362931 109 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 Y_RNA.122-201ENST00000363331 96 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 Y_RNA.275-201ENST00000364726 110 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 Y_RNA.297-201ENST00000364950 91 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 RNU1-109P-201ENST00000383960 147 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 Y_RNA.555-201ENST00000384673 110 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 RNU6-220P-201ENST00000390919 107 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 MIR887-201ENST00000401258 79 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 AL603908.1-201ENST00000406098 201 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 RPL30P4-201ENST00000429309 333 ntBASIC2.49□□□□□ -2.01
HOXD9P28356 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.49□□□□□ -2.01
HOXD9P28356 AL138752.1-201ENST00000452964 351 ntBASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms