Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 TSSC2-201ENST00000450217 709 ntBASIC18.96■□□□□ 0.63
HMGB4Q8WW32 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 AL121672.3-201ENST00000608644 468 ntBASIC18.96■□□□□ 0.63
HMGB4Q8WW32 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB4Q8WW32 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB4Q8WW32 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 AC016734.2-201ENST00000624325 1377 ntBASIC18.93■□□□□ 0.62
HMGB4Q8WW32 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 AL157384.1-201ENST00000445995 2473 ntBASIC18.93■□□□□ 0.62
HMGB4Q8WW32 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 SEC1P-202ENST00000473944 940 ntBASIC18.93■□□□□ 0.62
HMGB4Q8WW32 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 AC112497.1-201ENST00000624824 639 ntBASIC18.93■□□□□ 0.62
HMGB4Q8WW32 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 AL157888.1-201ENST00000631930 593 ntBASIC18.93■□□□□ 0.62
HMGB4Q8WW32 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB4Q8WW32 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms