Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.52■□□□□ 0.4
RNF4P78317 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.52■□□□□ 0.4
RNF4P78317 AC008622.2-201ENST00000617006 1229 ntBASIC17.52■□□□□ 0.4
RNF4P78317 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.52■□□□□ 0.4
RNF4P78317 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RNF4P78317 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RNF4P78317 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RNF4P78317 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RNF4P78317 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
RNF4P78317 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
RNF4P78317 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.52■□□□□ 0.39
RNF4P78317 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.51■□□□□ 0.39
RNF4P78317 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
RNF4P78317 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RNF4P78317 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RNF4P78317 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
RNF4P78317 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RNF4P78317 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RNF4P78317 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RNF4P78317 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RNF4P78317 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RNF4P78317 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.51■□□□□ 0.39
RNF4P78317 TERF1P1-201ENST00000311003 1181 ntBASIC17.51■□□□□ 0.39
RNF4P78317 RCN1P1-201ENST00000400413 996 ntBASIC17.51■□□□□ 0.39
RNF4P78317 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RNF4P78317 KRT18P21-201ENST00000515767 1272 ntBASIC17.51■□□□□ 0.39
RNF4P78317 AC010203.1-204ENST00000548782 407 ntBASIC17.51■□□□□ 0.39
RNF4P78317 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
RNF4P78317 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.51■□□□□ 0.39
RNF4P78317 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.51■□□□□ 0.39
RNF4P78317 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
RNF4P78317 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.51■□□□□ 0.39
RNF4P78317 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RNF4P78317 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.51■□□□□ 0.39
RNF4P78317 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RNF4P78317 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RNF4P78317 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.51■□□□□ 0.39
RNF4P78317 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RNF4P78317 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RNF4P78317 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RNF4P78317 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.5■□□□□ 0.39
RNF4P78317 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF4P78317 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF4P78317 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.5■□□□□ 0.39
RNF4P78317 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
RNF4P78317 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
RNF4P78317 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.5■□□□□ 0.39
RNF4P78317 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF4P78317 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF4P78317 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF4P78317 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.5■□□□□ 0.39
RNF4P78317 ATP5G1P1-201ENST00000448724 379 ntBASIC17.5■□□□□ 0.39
RNF4P78317 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.5■□□□□ 0.39
RNF4P78317 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
RNF4P78317 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.5■□□□□ 0.39
RNF4P78317 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.5■□□□□ 0.39
RNF4P78317 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.5■□□□□ 0.39
RNF4P78317 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF4P78317 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.49■□□□□ 0.39
RNF4P78317 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RNF4P78317 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF4P78317 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF4P78317 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF4P78317 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.49■□□□□ 0.39
RNF4P78317 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RNF4P78317 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.49■□□□□ 0.39
RNF4P78317 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RNF4P78317 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RNF4P78317 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RNF4P78317 AC073508.3-201ENST00000619697 1419 ntBASIC17.49■□□□□ 0.39
RNF4P78317 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.49■□□□□ 0.39
RNF4P78317 FAM210CP-201ENST00000445714 574 ntBASIC17.49■□□□□ 0.39
RNF4P78317 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RNF4P78317 AL512604.3-201ENST00000569583 964 ntBASIC17.49■□□□□ 0.39
RNF4P78317 AC092865.7-201ENST00000641832 219 ntBASIC17.49■□□□□ 0.39
RNF4P78317 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF4P78317 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RNF4P78317 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF4P78317 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF4P78317 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.49■□□□□ 0.39
RNF4P78317 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF4P78317 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.49■□□□□ 0.39
RNF4P78317 AL161938.1-201ENST00000569833 2180 ntBASIC17.49■□□□□ 0.39
RNF4P78317 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
RNF4P78317 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF4P78317 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.48■□□□□ 0.39
RNF4P78317 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RNF4P78317 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.48■□□□□ 0.39
RNF4P78317 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
RNF4P78317 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF4P78317 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
RNF4P78317 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF4P78317 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
RNF4P78317 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF4P78317 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.48■□□□□ 0.39
RNF4P78317 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.48■□□□□ 0.39
RNF4P78317 KRT18P57-201ENST00000443599 1254 ntBASIC17.48■□□□□ 0.39
RNF4P78317 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF4P78317 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.48■□□□□ 0.39
RNF4P78317 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms