Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC012640.2-201ENST00000561606 901 ntBASIC19.58■□□□□ 0.73
VCANP13611 INO80C-206ENST00000586489 594 ntTSL 3 BASIC19.58■□□□□ 0.73
VCANP13611 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VCANP13611 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VCANP13611 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
VCANP13611 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VCANP13611 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VCANP13611 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.58■□□□□ 0.73
VCANP13611 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.58■□□□□ 0.73
VCANP13611 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC19.58■□□□□ 0.73
VCANP13611 AC005332.3-201ENST00000589904 676 ntBASIC19.58■□□□□ 0.73
VCANP13611 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.58■□□□□ 0.73
VCANP13611 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.58■□□□□ 0.72
VCANP13611 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VCANP13611 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VCANP13611 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VCANP13611 PNMT-202ENST00000394246 821 ntTSL 2 BASIC19.58■□□□□ 0.72
VCANP13611 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VCANP13611 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.58■□□□□ 0.72
VCANP13611 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.58■□□□□ 0.72
VCANP13611 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.58■□□□□ 0.72
VCANP13611 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC19.58■□□□□ 0.72
VCANP13611 PLK5-205ENST00000642079 1969 ntBASIC19.58■□□□□ 0.72
VCANP13611 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCANP13611 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCANP13611 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
VCANP13611 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCANP13611 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCANP13611 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.57■□□□□ 0.72
VCANP13611 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC19.57■□□□□ 0.72
VCANP13611 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC19.57■□□□□ 0.72
VCANP13611 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
VCANP13611 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
VCANP13611 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.57■□□□□ 0.72
VCANP13611 AL391422.3-201ENST00000603791 2761 ntBASIC19.57■□□□□ 0.72
VCANP13611 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCANP13611 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCANP13611 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCANP13611 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCANP13611 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCANP13611 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.57■□□□□ 0.72
VCANP13611 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCANP13611 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCANP13611 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.57■□□□□ 0.72
VCANP13611 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC19.57■□□□□ 0.72
VCANP13611 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.57■□□□□ 0.72
VCANP13611 BNIP3P18-201ENST00000593976 575 ntBASIC19.57■□□□□ 0.72
VCANP13611 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
VCANP13611 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCANP13611 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCANP13611 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCANP13611 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCANP13611 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.57■□□□□ 0.72
VCANP13611 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCANP13611 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VCANP13611 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.56■□□□□ 0.72
VCANP13611 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.56■□□□□ 0.72
VCANP13611 PHGDH-210ENST00000641115 1638 ntBASIC19.56■□□□□ 0.72
VCANP13611 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCANP13611 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCANP13611 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCANP13611 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
VCANP13611 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCANP13611 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.56■□□□□ 0.72
VCANP13611 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCANP13611 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCANP13611 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
VCANP13611 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.56■□□□□ 0.72
VCANP13611 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VCANP13611 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
VCANP13611 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCANP13611 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
VCANP13611 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCANP13611 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC19.56■□□□□ 0.72
VCANP13611 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCANP13611 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.56■□□□□ 0.72
VCANP13611 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
VCANP13611 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCANP13611 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VCANP13611 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.55■□□□□ 0.72
VCANP13611 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.55■□□□□ 0.72
VCANP13611 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.55■□□□□ 0.72
VCANP13611 AC040169.1-201ENST00000565382 521 ntBASIC19.55■□□□□ 0.72
VCANP13611 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
VCANP13611 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VCANP13611 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VCANP13611 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCANP13611 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCANP13611 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCANP13611 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
VCANP13611 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCANP13611 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VCANP13611 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.55■□□□□ 0.72
VCANP13611 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VCANP13611 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC19.55■□□□□ 0.72
VCANP13611 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.55■□□□□ 0.72
VCANP13611 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC19.55■□□□□ 0.72
VCANP13611 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VCANP13611 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VCANP13611 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms