Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNU6-635P-201ENST00000516651 102 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 RNU2-44P-201ENST00000516795 194 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 SNORA48.11-201ENST00000517015 89 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.54□□□□□ -2
VPS4AQ9UN37 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.54□□□□□ -2
VPS4AQ9UN37 MIR4423-201ENST00000580922 80 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 MIR4635-201ENST00000583759 79 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.54□□□□□ -2
VPS4AQ9UN37 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.54□□□□□ -2
VPS4AQ9UN37 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
VPS4AQ9UN37 MIR410-201ENST00000362222 80 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 Y_RNA.26-201ENST00000362539 101 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 Y_RNA.105-201ENST00000363182 111 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 RNU1-112P-201ENST00000364401 164 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 SNORA18.2-201ENST00000383865 132 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 RNU6-26P-201ENST00000383985 107 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 Y_RNA.439-201ENST00000384119 94 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.53□□□□□ -2
VPS4AQ9UN37 SNORD115-46-201ENST00000390982 71 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 AL138827.1-201ENST00000402666 306 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 Y_RNA.595-201ENST00000410403 105 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 RNU6-121P-201ENST00000410525 99 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 RNU2-48P-201ENST00000410694 191 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 ELOCP21-201ENST00000412558 336 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 CR769767.1-201ENST00000436337 346 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.53□□□□□ -2
VPS4AQ9UN37 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.53□□□□□ -2
VPS4AQ9UN37 HSPE1P18-201ENST00000517602 280 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 AL161670.1-201ENST00000554348 137 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 MYL12BP1-201ENST00000569826 507 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 AC136932.1-201ENST00000574771 208 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 MIR4503-201ENST00000582187 83 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 Y_RNA.772-201ENST00000606692 102 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 7SK.10-201ENST00000621414 298 ntBASIC2.53□□□□□ -2
VPS4AQ9UN37 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS4AQ9UN37 RNU6-961P-201ENST00000363893 105 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 SNORD63-201ENST00000384262 68 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 Y_RNA.462-201ENST00000384268 102 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 RN7SKP192-201ENST00000411291 327 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS4AQ9UN37 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS4AQ9UN37 AC104389.3-201ENST00000445629 235 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 IFNA11P-201ENST00000446352 526 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS4AQ9UN37 CYP2C59P-201ENST00000457790 269 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 LINC01399-202ENST00000458450 244 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 snoU13.15-201ENST00000459407 104 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS4AQ9UN37 SNORA40.9-201ENST00000515895 93 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 RNA5SP148-201ENST00000516527 94 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 SNORA31.11-201ENST00000516528 139 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS4AQ9UN37 AK6P2-201ENST00000549020 471 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS4AQ9UN37 MIR5194-201ENST00000582634 120 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 AL449363.1-201ENST00000617815 186 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 AC008873.1-201ENST00000625051 138 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 AC090517.3-201ENST00000625170 141 ntBASIC2.52□□□□□ -2.01
VPS4AQ9UN37 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
VPS4AQ9UN37 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.51□□□□□ -2.01
VPS4AQ9UN37 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.51□□□□□ -2.01
VPS4AQ9UN37 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.51□□□□□ -2.01
VPS4AQ9UN37 LINC02555-201ENST00000563933 1951 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 RNU6-806P-201ENST00000365147 105 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 RNA5SP240-201ENST00000365355 128 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 Y_RNA.452-201ENST00000384202 108 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 Y_RNA.518-201ENST00000384552 113 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 MIR1294-201ENST00000408503 142 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 RNA5SP21-201ENST00000410917 96 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.51□□□□□ -2.01
VPS4AQ9UN37 IPO7P1-201ENST00000442031 636 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 DYNLT3P2-201ENST00000442517 295 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 NDUFB4P10-201ENST00000452541 359 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 SRIP1-201ENST00000489235 288 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS4AQ9UN37 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS4AQ9UN37 AC023824.2-201ENST00000566185 400 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.51□□□□□ -2.01
VPS4AQ9UN37 MIR5006-201ENST00000583027 110 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS4AQ9UN37 SNORD11B-201ENST00000607707 90 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 AC011476.5-201ENST00000615594 130 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 MIR8062-201ENST00000621515 85 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 AC130454.1-201ENST00000622948 401 ntBASIC2.51□□□□□ -2.01
VPS4AQ9UN37 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
VPS4AQ9UN37 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
VPS4AQ9UN37 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
VPS4AQ9UN37 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.5□□□□□ -2.01
VPS4AQ9UN37 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
VPS4AQ9UN37 ZNF658B-202ENST00000615961 3375 ntBASIC2.5□□□□□ -2.01
VPS4AQ9UN37 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
VPS4AQ9UN37 AC080100.1-201ENST00000624239 5356 ntBASIC2.5□□□□□ -2.01
VPS4AQ9UN37 MIR6073-201ENST00000352083 89 ntBASIC2.5□□□□□ -2.01
VPS4AQ9UN37 Y_RNA.19-201ENST00000362462 99 ntBASIC2.5□□□□□ -2.01
VPS4AQ9UN37 Y_RNA.222-201ENST00000364264 102 ntBASIC2.5□□□□□ -2.01
VPS4AQ9UN37 RNU6-234P-201ENST00000365229 104 ntBASIC2.5□□□□□ -2.01
VPS4AQ9UN37 RNU6-472P-201ENST00000384299 107 ntBASIC2.5□□□□□ -2.01
VPS4AQ9UN37 RNU6-196P-201ENST00000384315 107 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 152 ms