Protein–RNA interactions for Protein: Q9P2H5

USP35, Ubiquitin carboxyl-terminal hydrolase 35, humanhuman

Predictions only

Length 1,018 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP35Q9P2H5 AC091925.1-201ENST00000623204 462 ntBASIC3.22□□□□□ -1.89
USP35Q9P2H5 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.22□□□□□ -1.89
USP35Q9P2H5 SNORD115-3-201ENST00000363100 82 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 Y_RNA.197-201ENST00000364004 102 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 RNU6-1305P-201ENST00000364353 104 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 Y_RNA.252-201ENST00000364556 101 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 RNU6-1235P-201ENST00000384559 107 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 Y_RNA.535-201ENST00000384612 99 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 AL033519.2-201ENST00000403958 392 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 MIR1283-2-201ENST00000408621 87 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 RNA5SP504-201ENST00000410676 117 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.21□□□□□ -1.9
USP35Q9P2H5 AL445305.1-201ENST00000432577 575 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 RNU6-498P-201ENST00000459468 107 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 AC055731.1-201ENST00000474387 401 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 AC105758.1-201ENST00000506038 399 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 AC026436.1-201ENST00000510537 270 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 SNORD116.3-201ENST00000517176 78 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 MIR5092-201ENST00000583139 88 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 AC103810.6-201ENST00000606708 136 ntBASIC3.21□□□□□ -1.9
USP35Q9P2H5 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.21□□□□□ -1.9
USP35Q9P2H5 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.21□□□□□ -1.9
USP35Q9P2H5 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP35Q9P2H5 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
USP35Q9P2H5 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.2□□□□□ -1.9
USP35Q9P2H5 MTND5P35-201ENST00000557537 1720 ntBASIC3.2□□□□□ -1.9
USP35Q9P2H5 U3.8-201ENST00000363675 217 ntBASIC3.2□□□□□ -1.9
USP35Q9P2H5 MIR329-1-201ENST00000385028 80 ntBASIC3.2□□□□□ -1.9
USP35Q9P2H5 MRPS18CP6-201ENST00000423587 223 ntBASIC3.2□□□□□ -1.9
USP35Q9P2H5 AC139712.2-201ENST00000424302 339 ntBASIC3.2□□□□□ -1.9
USP35Q9P2H5 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.2□□□□□ -1.9
USP35Q9P2H5 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.2□□□□□ -1.9
USP35Q9P2H5 RN7SKP49-201ENST00000516675 260 ntBASIC3.2□□□□□ -1.9
USP35Q9P2H5 AC090574.1-201ENST00000623186 233 ntBASIC3.2□□□□□ -1.9
USP35Q9P2H5 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
USP35Q9P2H5 Y_RNA.140-201ENST00000363474 103 ntBASIC3.19□□□□□ -1.9
USP35Q9P2H5 RNA5SP493-201ENST00000364115 91 ntBASIC3.19□□□□□ -1.9
USP35Q9P2H5 Y_RNA.338-201ENST00000365320 114 ntBASIC3.19□□□□□ -1.9
USP35Q9P2H5 RNU6-1145P-201ENST00000384246 107 ntBASIC3.19□□□□□ -1.9
USP35Q9P2H5 RPS20P15-201ENST00000412792 311 ntBASIC3.19□□□□□ -1.9
USP35Q9P2H5 BX510359.4-201ENST00000423750 193 ntBASIC3.19□□□□□ -1.9
USP35Q9P2H5 MTND2P29-201ENST00000438595 412 ntBASIC3.19□□□□□ -1.9
USP35Q9P2H5 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.19□□□□□ -1.9
USP35Q9P2H5 AC027575.1-201ENST00000481064 460 ntBASIC3.19□□□□□ -1.9
USP35Q9P2H5 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.19□□□□□ -1.9
USP35Q9P2H5 RNU6-856P-201ENST00000516959 98 ntBASIC3.19□□□□□ -1.9
USP35Q9P2H5 RNU1-117P-201ENST00000517041 158 ntBASIC3.19□□□□□ -1.9
USP35Q9P2H5 MIR3169-201ENST00000578032 83 ntBASIC3.19□□□□□ -1.9
USP35Q9P2H5 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC3.19□□□□□ -1.9
USP35Q9P2H5 AL080274.1-201ENST00000605565 220 ntBASIC3.19□□□□□ -1.9
USP35Q9P2H5 AL160413.1-201ENST00000622780 310 ntBASIC3.19□□□□□ -1.9
USP35Q9P2H5 AL356292.1-201ENST00000283110 373 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 Y_RNA.4-201ENST00000362333 112 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 RNU6-23P-201ENST00000363283 107 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 SNORD114-6-201ENST00000364393 72 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 Y_RNA.314-201ENST00000365114 102 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 RNU1-115P-201ENST00000365329 160 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 Y_RNA.395-201ENST00000383945 109 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USP35Q9P2H5 Y_RNA.595-201ENST00000410403 105 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 RNU6-1001P-201ENST00000411265 100 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 AC007677.1-201ENST00000445757 515 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 U8.22-201ENST00000459141 133 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 HMGN1P13-201ENST00000505795 138 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 AC022868.1-201ENST00000517767 391 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.18□□□□□ -1.9
USP35Q9P2H5 AC007229.1-201ENST00000590455 412 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 MZT1P2-201ENST00000604387 248 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 TP73-AS1.1-201ENST00000611447 161 ntBASIC3.18□□□□□ -1.9
USP35Q9P2H5 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP35Q9P2H5 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.17□□□□□ -1.9
USP35Q9P2H5 Y_RNA.112-201ENST00000363250 102 ntBASIC3.17□□□□□ -1.9
USP35Q9P2H5 RNU6-879P-201ENST00000364328 108 ntBASIC3.17□□□□□ -1.9
USP35Q9P2H5 RNA5SP450-201ENST00000411206 102 ntBASIC3.17□□□□□ -1.9
USP35Q9P2H5 Y_RNA.639-201ENST00000458981 102 ntBASIC3.17□□□□□ -1.9
USP35Q9P2H5 AL590240.4-201ENST00000616908 390 ntBASIC3.17□□□□□ -1.9
USP35Q9P2H5 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.17□□□□□ -1.9
USP35Q9P2H5 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC3.17□□□□□ -1.9
USP35Q9P2H5 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
USP35Q9P2H5 Y_RNA.5-201ENST00000362334 102 ntBASIC3.16□□□□□ -1.9
USP35Q9P2H5 RNU4-42P-201ENST00000364738 142 ntBASIC3.16□□□□□ -1.9
USP35Q9P2H5 SNORD42.2-201ENST00000365570 69 ntBASIC3.16□□□□□ -1.9
USP35Q9P2H5 SNORA64-201ENST00000384674 134 ntBASIC3.16□□□□□ -1.9
USP35Q9P2H5 MIR144-201ENST00000384886 86 ntBASIC3.16□□□□□ -1.9
USP35Q9P2H5 RNU11-3P-201ENST00000391111 133 ntBASIC3.16□□□□□ -1.9
USP35Q9P2H5 Y_RNA.605-201ENST00000410577 105 ntBASIC3.16□□□□□ -1.9
USP35Q9P2H5 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.16□□□□□ -1.9
USP35Q9P2H5 AC018865.2-201ENST00000423631 129 ntBASIC3.16□□□□□ -1.9
USP35Q9P2H5 AL353689.1-201ENST00000438895 199 ntBASIC3.16□□□□□ -1.9
USP35Q9P2H5 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.16□□□□□ -1.9
USP35Q9P2H5 AC074133.1-201ENST00000515696 183 ntBASIC3.16□□□□□ -1.9
USP35Q9P2H5 RNA5SP82-201ENST00000516707 92 ntBASIC3.16□□□□□ -1.9
USP35Q9P2H5 MYL12BP1-201ENST00000569826 507 ntBASIC3.16□□□□□ -1.9
USP35Q9P2H5 AL138825.1-201ENST00000618587 192 ntBASIC3.16□□□□□ -1.9
USP35Q9P2H5 AC138305.3-201ENST00000624988 240 ntBASIC3.16□□□□□ -1.9
USP35Q9P2H5 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.16□□□□□ -1.9
USP35Q9P2H5 AC005336.3-201ENST00000623833 2679 ntBASIC3.15□□□□□ -1.91
USP35Q9P2H5 RNU6-1301P-201ENST00000362724 104 ntBASIC3.15□□□□□ -1.91
USP35Q9P2H5 RNU6-727P-201ENST00000363592 107 ntBASIC3.15□□□□□ -1.91
USP35Q9P2H5 RNA5SP456-201ENST00000364002 114 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms