Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SNORD116-15-201ENST00000384445 92 ntBASIC3.6□□□□□ -1.83
TRIM56Q9BRZ2 SNORD116-19-201ENST00000384729 92 ntBASIC3.6□□□□□ -1.83
TRIM56Q9BRZ2 MIR15B-201ENST00000385045 98 ntBASIC3.6□□□□□ -1.83
TRIM56Q9BRZ2 SNORA12-201ENST00000391162 147 ntBASIC3.6□□□□□ -1.83
TRIM56Q9BRZ2 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC3.6□□□□□ -1.83
TRIM56Q9BRZ2 HSPE1P21-201ENST00000438283 308 ntBASIC3.6□□□□□ -1.83
TRIM56Q9BRZ2 RBMY2UP-201ENST00000453474 324 ntBASIC3.6□□□□□ -1.83
TRIM56Q9BRZ2 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.6□□□□□ -1.83
TRIM56Q9BRZ2 AL161756.2-201ENST00000604597 246 ntBASIC3.6□□□□□ -1.83
TRIM56Q9BRZ2 TUG1_4.1-201ENST00000619464 181 ntBASIC3.6□□□□□ -1.83
TRIM56Q9BRZ2 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.6□□□□□ -1.83
TRIM56Q9BRZ2 MIR7153-201ENST00000637758 57 ntBASIC3.6□□□□□ -1.83
TRIM56Q9BRZ2 AL513302.2-201ENST00000562313 1842 ntBASIC3.6□□□□□ -1.83
TRIM56Q9BRZ2 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.6□□□□□ -1.83
TRIM56Q9BRZ2 AL159152.1-201ENST00000635019 2587 ntBASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 Y_RNA.229-201ENST00000364347 113 ntBASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 Y_RNA.420-201ENST00000384043 110 ntBASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 MIR7-3-201ENST00000384898 110 ntBASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 MIR1185-2-201ENST00000408687 86 ntBASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 RPS4XP2-201ENST00000458402 793 ntBASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 RNU6-1333P-201ENST00000516162 93 ntBASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 RNU1-95P-201ENST00000516357 160 ntBASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 RNU5F-4P-201ENST00000516581 114 ntBASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 RNU1-128P-201ENST00000516704 160 ntBASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 MIR3646-201ENST00000578301 84 ntBASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 XIST_intron.1-201ENST00000619444 68 ntBASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 AC022149.2-201ENST00000621061 203 ntBASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 U4.6-201ENST00000621618 127 ntBASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
TRIM56Q9BRZ2 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
TRIM56Q9BRZ2 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 AC103988.1-201ENST00000566382 2177 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 AC009487.4-201ENST00000624969 3585 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 SNORD9-201ENST00000362566 104 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 RNU6-525P-201ENST00000363685 104 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 Y_RNA.353-201ENST00000365440 108 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 SNORA5A-201ENST00000384111 134 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 MIR873-201ENST00000401120 77 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 AL606845.1-201ENST00000404881 255 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 MIR1294-201ENST00000408503 142 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 PRSS3P4-201ENST00000453323 162 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 AC114982.1-201ENST00000469402 321 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 HMGN2P9-201ENST00000476875 229 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 SEM1P1-201ENST00000506694 209 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 MRPS36P2-201ENST00000512569 299 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 AC026333.2-201ENST00000542164 106 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 AC018630.3-201ENST00000542637 96 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 LARP7P3-201ENST00000579888 337 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 MIR548AY-201ENST00000617669 107 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 AC012314.7-201ENST00000619693 93 ntBASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.58□□□□□ -1.84
TRIM56Q9BRZ2 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 MIR30E-201ENST00000362104 92 ntBASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 Y_RNA.71-201ENST00000362892 104 ntBASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 Y_RNA.218-201ENST00000364218 104 ntBASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 Y_RNA.261-201ENST00000364631 102 ntBASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 SNORA51.4-201ENST00000364993 124 ntBASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 RNU6-407P-201ENST00000365280 104 ntBASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 U6atac.2-201ENST00000408644 118 ntBASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 HSPE1P13-201ENST00000451143 297 ntBASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 AC006539.3-201ENST00000454258 129 ntBASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 RNU6-1211P-201ENST00000459179 105 ntBASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 AC083906.5-201ENST00000503722 328 ntBASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 SCARNA17.1-201ENST00000516211 143 ntBASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 SCARNA17.2-201ENST00000516334 143 ntBASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 SCARNA17.4-201ENST00000614296 143 ntBASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 AC009093.8-201ENST00000641769 292 ntBASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
TRIM56Q9BRZ2 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 RNU6-271P-201ENST00000363858 105 ntBASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 RNY3P5-201ENST00000384127 102 ntBASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 SNORD20-201ENST00000384550 80 ntBASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 SNORA20-201ENST00000384662 132 ntBASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 MIR518C-201ENST00000384822 101 ntBASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 AL159169.1-201ENST00000421119 127 ntBASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 AC017083.1-201ENST00000428093 483 ntBASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 RPL23AP7-203ENST00000449021 469 ntBASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 CENPBD1P1-201ENST00000464061 469 ntBASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 RNU6-579P-201ENST00000516879 102 ntBASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 AC090517.3-201ENST00000625170 141 ntBASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 AC068647.2-201ENST00000637380 353 ntBASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.56□□□□□ -1.84
TRIM56Q9BRZ2 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 193.9 ms