Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC-1.74□□□□□ -2.69
VPS13AQ96RL7 AL354950.2-201ENST00000617939 290 ntBASIC-1.74□□□□□ -2.69
VPS13AQ96RL7 Y_RNA.456-201ENST00000384232 111 ntBASIC-1.75□□□□□ -2.69
VPS13AQ96RL7 ART2BP-201ENST00000453501 499 ntBASIC-1.75□□□□□ -2.69
VPS13AQ96RL7 MIR5706-201ENST00000579841 80 ntBASIC-1.75□□□□□ -2.69
VPS13AQ96RL7 RNU6-1048P-201ENST00000364054 107 ntBASIC-1.75□□□□□ -2.69
VPS13AQ96RL7 RNU6-1074P-201ENST00000383995 104 ntBASIC-1.75□□□□□ -2.69
VPS13AQ96RL7 RNU6-57P-201ENST00000411348 103 ntBASIC-1.75□□□□□ -2.69
VPS13AQ96RL7 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC-1.75□□□□□ -2.69
VPS13AQ96RL7 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC-1.75□□□□□ -2.69
VPS13AQ96RL7 AGGF1P4-201ENST00000568249 801 ntBASIC-1.75□□□□□ -2.69
VPS13AQ96RL7 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC-1.75□□□□□ -2.69
VPS13AQ96RL7 AL445193.1-201ENST00000441183 141 ntBASIC-1.75□□□□□ -2.69
VPS13AQ96RL7 snoU13.30-201ENST00000458951 104 ntBASIC-1.75□□□□□ -2.69
VPS13AQ96RL7 RNU6-798P-201ENST00000516912 103 ntBASIC-1.75□□□□□ -2.69
VPS13AQ96RL7 AC022784.5-201ENST00000522241 437 ntBASIC-1.75□□□□□ -2.69
VPS13AQ96RL7 AL391903.3-201ENST00000612158 163 ntBASIC-1.75□□□□□ -2.69
VPS13AQ96RL7 RNU6-194P-201ENST00000363862 105 ntBASIC-1.76□□□□□ -2.69
VPS13AQ96RL7 RNU6-455P-201ENST00000384681 107 ntBASIC-1.76□□□□□ -2.69
VPS13AQ96RL7 RN7SKP256-201ENST00000517201 314 ntBASIC-1.76□□□□□ -2.69
VPS13AQ96RL7 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC-1.76□□□□□ -2.69
VPS13AQ96RL7 ZNF299P-201ENST00000406845 1804 ntBASIC-1.76□□□□□ -2.69
VPS13AQ96RL7 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-1.76□□□□□ -2.69
VPS13AQ96RL7 MIR147A-201ENST00000385079 72 ntBASIC-1.76□□□□□ -2.69
VPS13AQ96RL7 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC-1.76□□□□□ -2.69
VPS13AQ96RL7 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC-1.76□□□□□ -2.69
VPS13AQ96RL7 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC-1.77□□□□□ -2.69
VPS13AQ96RL7 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-1.77□□□□□ -2.69
VPS13AQ96RL7 AP001429.1-201ENST00000602568 530 ntBASIC-1.77□□□□□ -2.69
VPS13AQ96RL7 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC-1.77□□□□□ -2.69
VPS13AQ96RL7 RNU1-86P-201ENST00000516108 154 ntBASIC-1.77□□□□□ -2.69
VPS13AQ96RL7 RNU1-107P-201ENST00000516617 154 ntBASIC-1.77□□□□□ -2.69
VPS13AQ96RL7 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC-1.77□□□□□ -2.69
VPS13AQ96RL7 AC133485.4-201ENST00000561835 220 ntBASIC-1.77□□□□□ -2.69
VPS13AQ96RL7 MIR3169-201ENST00000578032 83 ntBASIC-1.77□□□□□ -2.69
VPS13AQ96RL7 AC078795.3-201ENST00000602913 472 ntBASIC-1.77□□□□□ -2.69
VPS13AQ96RL7 U7.6-201ENST00000610841 64 ntBASIC-1.77□□□□□ -2.69
VPS13AQ96RL7 ATM-228ENST00000639240 498 ntTSL 5 BASIC-1.77□□□□□ -2.69
VPS13AQ96RL7 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC-1.78□□□□□ -2.69
VPS13AQ96RL7 RNA5SP86-201ENST00000390869 98 ntBASIC-1.78□□□□□ -2.69
VPS13AQ96RL7 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC-1.78□□□□□ -2.69
VPS13AQ96RL7 RNY4P37-201ENST00000516225 96 ntBASIC-1.78□□□□□ -2.69
VPS13AQ96RL7 SNORD114-6-201ENST00000364393 72 ntBASIC-1.78□□□□□ -2.69
VPS13AQ96RL7 RNU6-1292P-201ENST00000383856 107 ntBASIC-1.78□□□□□ -2.69
VPS13AQ96RL7 Y_RNA.483-201ENST00000384380 101 ntBASIC-1.78□□□□□ -2.69
VPS13AQ96RL7 RNU6-1001P-201ENST00000411265 100 ntBASIC-1.78□□□□□ -2.69
VPS13AQ96RL7 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC-1.78□□□□□ -2.69
VPS13AQ96RL7 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC-1.78□□□□□ -2.69
VPS13AQ96RL7 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC-1.78□□□□□ -2.69
VPS13AQ96RL7 AP002001.1-203ENST00000534002 267 ntBASIC-1.78□□□□□ -2.69
VPS13AQ96RL7 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC-1.78□□□□□ -2.69
VPS13AQ96RL7 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC-1.79□□□□□ -2.7
VPS13AQ96RL7 Y_RNA.537-201ENST00000384626 109 ntBASIC-1.79□□□□□ -2.7
VPS13AQ96RL7 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.79□□□□□ -2.7
VPS13AQ96RL7 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC-1.79□□□□□ -2.7
VPS13AQ96RL7 RNU6-412P-201ENST00000516434 106 ntBASIC-1.79□□□□□ -2.7
VPS13AQ96RL7 SNORD60.2-201ENST00000516883 86 ntBASIC-1.79□□□□□ -2.7
VPS13AQ96RL7 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC-1.79□□□□□ -2.7
VPS13AQ96RL7 RNA5SP258-201ENST00000362750 119 ntBASIC-1.79□□□□□ -2.7
VPS13AQ96RL7 SNORA2B-201ENST00000384583 137 ntBASIC-1.79□□□□□ -2.7
VPS13AQ96RL7 AC093019.1-201ENST00000443135 252 ntBASIC-1.79□□□□□ -2.7
VPS13AQ96RL7 AL162376.1-201ENST00000624117 175 ntBASIC-1.79□□□□□ -2.7
VPS13AQ96RL7 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.8□□□□□ -2.7
VPS13AQ96RL7 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC-1.8□□□□□ -2.7
VPS13AQ96RL7 RPL23AP75-201ENST00000491601 451 ntBASIC-1.8□□□□□ -2.7
VPS13AQ96RL7 AC108019.1-201ENST00000512540 175 ntBASIC-1.8□□□□□ -2.7
VPS13AQ96RL7 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC-1.8□□□□□ -2.7
VPS13AQ96RL7 AL451064.1-201ENST00000607718 471 ntBASIC-1.8□□□□□ -2.7
VPS13AQ96RL7 MTCO2P1-201ENST00000424648 477 ntBASIC-1.8□□□□□ -2.7
VPS13AQ96RL7 USMG5P1-201ENST00000425964 177 ntBASIC-1.8□□□□□ -2.7
VPS13AQ96RL7 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC-1.8□□□□□ -2.7
VPS13AQ96RL7 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC-1.8□□□□□ -2.7
VPS13AQ96RL7 AC017037.3-201ENST00000625016 472 ntBASIC-1.8□□□□□ -2.7
VPS13AQ96RL7 AC097372.4-201ENST00000625025 466 ntBASIC-1.8□□□□□ -2.7
VPS13AQ96RL7 AC127391.1-201ENST00000411737 98 ntBASIC-1.8□□□□□ -2.7
VPS13AQ96RL7 AC090049.2-201ENST00000550377 109 ntBASIC-1.8□□□□□ -2.7
VPS13AQ96RL7 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.8□□□□□ -2.7
VPS13AQ96RL7 Y_RNA.396-201ENST00000383949 103 ntBASIC-1.81□□□□□ -2.7
VPS13AQ96RL7 MTCO2P23-201ENST00000425216 680 ntBASIC-1.81□□□□□ -2.7
VPS13AQ96RL7 MTCO3P28-201ENST00000513351 515 ntBASIC-1.81□□□□□ -2.7
VPS13AQ96RL7 RNU6-1258P-201ENST00000516911 111 ntBASIC-1.81□□□□□ -2.7
VPS13AQ96RL7 RNU2-46P-201ENST00000517038 113 ntBASIC-1.81□□□□□ -2.7
VPS13AQ96RL7 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC-1.81□□□□□ -2.7
VPS13AQ96RL7 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC-1.81□□□□□ -2.7
VPS13AQ96RL7 AL359999.1-201ENST00000604513 294 ntBASIC-1.81□□□□□ -2.7
VPS13AQ96RL7 RNU6-1176P-201ENST00000390955 107 ntBASIC-1.81□□□□□ -2.7
VPS13AQ96RL7 TXNL1P1-201ENST00000429528 554 ntBASIC-1.81□□□□□ -2.7
VPS13AQ96RL7 AL158053.1-201ENST00000441503 453 ntBASIC-1.81□□□□□ -2.7
VPS13AQ96RL7 RNA5SP391-201ENST00000363456 119 ntBASIC-1.82□□□□□ -2.7
VPS13AQ96RL7 SNORD100-201ENST00000408573 76 ntBASIC-1.82□□□□□ -2.7
VPS13AQ96RL7 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC-1.82□□□□□ -2.7
VPS13AQ96RL7 CALM2P4-201ENST00000430810 426 ntBASIC-1.82□□□□□ -2.7
VPS13AQ96RL7 AL627311.1-201ENST00000431514 115 ntBASIC-1.82□□□□□ -2.7
VPS13AQ96RL7 SNRPEP8-201ENST00000442866 260 ntBASIC-1.82□□□□□ -2.7
VPS13AQ96RL7 MTND2P24-201ENST00000453434 806 ntBASIC-1.82□□□□□ -2.7
VPS13AQ96RL7 RNU7-157P-201ENST00000459600 66 ntBASIC-1.82□□□□□ -2.7
VPS13AQ96RL7 AP000870.1-201ENST00000472927 406 ntBASIC-1.82□□□□□ -2.7
VPS13AQ96RL7 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC-1.82□□□□□ -2.7
VPS13AQ96RL7 AC120349.3-201ENST00000624377 529 ntBASIC-1.82□□□□□ -2.7
VPS13AQ96RL7 AP002371.2-201ENST00000624450 503 ntBASIC-1.82□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms