Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ACA59.1-201ENST00000515966 143 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 RNU6-358P-201ENST00000516564 75 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.52□□□□□ -2.17
VPS39Q96JC1 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.52□□□□□ -2.17
VPS39Q96JC1 UBL5P4-201ENST00000562584 236 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.52□□□□□ -2.17
VPS39Q96JC1 AC083806.3-201ENST00000614016 455 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
VPS39Q96JC1 ICE2P2-201ENST00000483823 2787 ntBASIC1.52□□□□□ -2.17
VPS39Q96JC1 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
VPS39Q96JC1 RNA5SP190-201ENST00000365222 118 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 MIR548F5-201ENST00000408421 86 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 RNU2-7P-201ENST00000410794 178 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 RPS26P42-201ENST00000413485 326 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 RPL30P13-201ENST00000418873 348 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 AC060773.1-201ENST00000421698 310 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 MTCO3P29-201ENST00000432119 779 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 AC007395.1-201ENST00000451333 677 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 ATP5J2P3-201ENST00000451550 258 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 AC099513.1-201ENST00000490423 301 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 RNU6-1041P-201ENST00000516254 102 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 SUB1P3-201ENST00000564581 315 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 SNORD53B-201ENST00000577887 78 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 AC060780.3-201ENST00000589464 80 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 AC092794.1-201ENST00000612734 582 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 TCL6_2.1-201ENST00000615162 119 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 MIR8063-201ENST00000621930 81 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 AC010615.1-201ENST00000594254 1764 ntBASIC1.51□□□□□ -2.17
VPS39Q96JC1 CASC19-280ENST00000642102 1351 ntBASIC1.5□□□□□ -2.17
VPS39Q96JC1 RNU6-862P-201ENST00000362804 105 ntBASIC1.5□□□□□ -2.17
VPS39Q96JC1 Y_RNA.248-201ENST00000364501 109 ntBASIC1.5□□□□□ -2.17
VPS39Q96JC1 MIR1283-1-201ENST00000408494 87 ntBASIC1.5□□□□□ -2.17
VPS39Q96JC1 RNU6-174P-201ENST00000410406 106 ntBASIC1.5□□□□□ -2.17
VPS39Q96JC1 RNA5SP504-201ENST00000410676 117 ntBASIC1.5□□□□□ -2.17
VPS39Q96JC1 DAP3P1-201ENST00000441522 278 ntBASIC1.5□□□□□ -2.17
VPS39Q96JC1 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS39Q96JC1 AC082651.2-201ENST00000496833 166 ntBASIC1.5□□□□□ -2.17
VPS39Q96JC1 RNU6-58P-201ENST00000517143 103 ntBASIC1.5□□□□□ -2.17
VPS39Q96JC1 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
VPS39Q96JC1 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS39Q96JC1 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS39Q96JC1 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS39Q96JC1 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS39Q96JC1 MIR5696-201ENST00000578474 85 ntBASIC1.5□□□□□ -2.17
VPS39Q96JC1 MIR4273-201ENST00000582824 84 ntBASIC1.5□□□□□ -2.17
VPS39Q96JC1 AC137590.2-201ENST00000619709 240 ntBASIC1.5□□□□□ -2.17
VPS39Q96JC1 AL121890.5-201ENST00000620848 304 ntBASIC1.5□□□□□ -2.17
VPS39Q96JC1 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.5□□□□□ -2.17
VPS39Q96JC1 MTND5P10-201ENST00000603719 1809 ntBASIC1.5□□□□□ -2.17
VPS39Q96JC1 AC100821.1-201ENST00000523153 2479 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 SNORD33-201ENST00000362761 85 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 Y_RNA.132-201ENST00000363421 102 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 Y_RNA.184-201ENST00000363884 108 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 RNU6-1305P-201ENST00000364353 104 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 SNORD1A-201ENST00000364968 72 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 SNORD26-201ENST00000384147 75 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 RNU6-1013P-201ENST00000384180 107 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 SNORA67.2-201ENST00000384300 149 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 AC243428.1-201ENST00000421099 264 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 FGF7P6-202ENST00000451282 293 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 snoU13.30-201ENST00000458951 104 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 HMGN2P9-201ENST00000476875 229 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 RNA5SP481-201ENST00000516814 122 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 RNU1-117P-201ENST00000517041 158 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 CBX3P8-201ENST00000532412 525 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 AC027288.2-201ENST00000553028 243 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 AP003465.2-201ENST00000602571 373 ntBASIC1.49□□□□□ -2.17
VPS39Q96JC1 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.49□□□□□ -2.17
VPS39Q96JC1 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.48□□□□□ -2.17
VPS39Q96JC1 MIR302D-201ENST00000362275 68 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 RNU6-727P-201ENST00000363592 107 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 RNU1-42P-201ENST00000364033 160 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 RNU6-1019P-201ENST00000364424 107 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 SNORD87-201ENST00000364849 89 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 RNU4-9P-201ENST00000364951 139 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 Y_RNA.405-201ENST00000383979 100 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 Y_RNA.451-201ENST00000384200 100 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 Y_RNA.524-201ENST00000384564 100 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 Y_RNA.561-201ENST00000384694 100 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 MIR548K-201ENST00000408406 116 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 MTND3P8-201ENST00000412909 339 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.48□□□□□ -2.17
VPS39Q96JC1 SDAD1P3-201ENST00000427380 333 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 RPS3AP52-201ENST00000435639 297 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 AC009237.7-201ENST00000447357 229 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 AC026782.1-201ENST00000512952 449 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 Y_RNA.670-201ENST00000516255 105 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 RNA5SP384-201ENST00000516615 116 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 RNU7-30P-201ENST00000516835 62 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 RNU1-54P-201ENST00000517181 120 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 AP003033.1-201ENST00000527244 415 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 AK6P2-201ENST00000549020 471 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.48□□□□□ -2.17
VPS39Q96JC1 MIR4524B-201ENST00000581569 115 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 BX322639.1-202ENST00000423987 2213 ntBASIC1.48□□□□□ -2.17
VPS39Q96JC1 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
VPS39Q96JC1 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.47□□□□□ -2.17
VPS39Q96JC1 SNORA33-201ENST00000363664 130 ntBASIC1.47□□□□□ -2.17
VPS39Q96JC1 Y_RNA.160-201ENST00000363677 92 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 185.7 ms