Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 LINC02555-201ENST00000563933 1951 ntBASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 Y_RNA.64-201ENST00000362845 102 ntBASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 Y_RNA.355-201ENST00000365462 98 ntBASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 Y_RNA.512-201ENST00000384518 102 ntBASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 UQCRBP2-201ENST00000447827 297 ntBASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 AC245517.4-201ENST00000448601 281 ntBASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 LINC01399-202ENST00000458450 244 ntBASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 AC091179.3-201ENST00000474761 144 ntBASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 RN7SL636P-201ENST00000497504 294 ntBASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 AC074133.1-201ENST00000515696 183 ntBASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 AP003733.2-201ENST00000529409 171 ntBASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 ZNF861P-201ENST00000588126 639 ntBASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 MZT1P2-201ENST00000604387 248 ntBASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 AC138915.1-201ENST00000565427 1685 ntBASIC3.14□□□□□ -1.91
SMC1BQ8NDV3 SNORD32B-201ENST00000364460 84 ntBASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 Y_RNA.461-201ENST00000384263 103 ntBASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 MIR1294-201ENST00000408503 142 ntBASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 CBX3P6-201ENST00000430257 527 ntBASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 AC009237.7-201ENST00000447357 229 ntBASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 CYP2C59P-201ENST00000457790 269 ntBASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 RN7SL633P-201ENST00000488974 297 ntBASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 RPL36AP21-201ENST00000490372 323 ntBASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 RNU6-344P-201ENST00000516635 111 ntBASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 RNU2-44P-201ENST00000516795 194 ntBASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 MIR3616-201ENST00000584070 92 ntBASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 AC107871.2-201ENST00000612894 502 ntBASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.13□□□□□ -1.91
SMC1BQ8NDV3 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 RNU1-72P-201ENST00000362976 153 ntBASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 RNU6-727P-201ENST00000363592 107 ntBASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 Y_RNA.222-201ENST00000364264 102 ntBASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 RNU6-1274P-201ENST00000384557 107 ntBASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 FO393413.1-201ENST00000402892 195 ntBASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 AL033519.2-201ENST00000403958 392 ntBASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 SNORD88.1-201ENST00000408684 91 ntBASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 AC025465.3-201ENST00000510570 311 ntBASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 RNU6-408P-201ENST00000515910 100 ntBASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 RNA5SP76-201ENST00000516277 87 ntBASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 SNORD11B-201ENST00000607707 90 ntBASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 TP73-AS1.1-201ENST00000611447 161 ntBASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 MIR6733-201ENST00000635723 61 ntBASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 AC092593.1-201ENST00000515413 1815 ntBASIC3.12□□□□□ -1.91
SMC1BQ8NDV3 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 Y_RNA.288-201ENST00000364854 92 ntBASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 RNU6-806P-201ENST00000365147 105 ntBASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 Y_RNA.462-201ENST00000384268 102 ntBASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 Y_RNA.618-201ENST00000410949 107 ntBASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 AC096920.1-201ENST00000423991 241 ntBASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 RPS12P2-201ENST00000439728 269 ntBASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 RPS23P5-201ENST00000495419 428 ntBASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 AC233702.2-202ENST00000562547 291 ntBASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 MIR4300-201ENST00000581016 96 ntBASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
SMC1BQ8NDV3 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 Y_RNA.26-201ENST00000362539 101 ntBASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 Y_RNA.796-201ENST00000364268 102 ntBASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 Y_RNA.799-201ENST00000364992 102 ntBASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 RNA5SP240-201ENST00000365355 128 ntBASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 SNORD63-201ENST00000384262 68 ntBASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 Y_RNA.498-201ENST00000384460 102 ntBASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 MIR518C-201ENST00000384822 101 ntBASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 SNORD115-46-201ENST00000390982 71 ntBASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 RNU2-63P-201ENST00000410792 194 ntBASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 RNU5A-5P-201ENST00000411054 116 ntBASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 RNU6-625P-201ENST00000459412 107 ntBASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 AC090515.1-201ENST00000465295 476 ntBASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 RPL26P26-201ENST00000480251 434 ntBASIC3.1□□□□□ -1.91
SMC1BQ8NDV3 RNU5F-4P-201ENST00000516581 114 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms