Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC245102.2-201ENST00000448956 180 ntBASIC1.84□□□□□ -2.11
SOX3P41225 MIR2053-201ENST00000459295 91 ntBASIC1.84□□□□□ -2.11
SOX3P41225 AC027575.1-201ENST00000481064 460 ntBASIC1.84□□□□□ -2.11
SOX3P41225 RPS27P21-201ENST00000486977 252 ntBASIC1.84□□□□□ -2.11
SOX3P41225 RRN3P3-201ENST00000549207 578 ntBASIC1.84□□□□□ -2.11
SOX3P41225 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.84□□□□□ -2.11
SOX3P41225 AC104984.5-201ENST00000586878 94 ntBASIC1.84□□□□□ -2.11
SOX3P41225 AL031274.2-201ENST00000599419 203 ntBASIC1.84□□□□□ -2.11
SOX3P41225 AC080078.3-201ENST00000605407 463 ntBASIC1.84□□□□□ -2.11
SOX3P41225 AC025754.2-201ENST00000606491 432 ntBASIC1.84□□□□□ -2.11
SOX3P41225 AC005296.1-201ENST00000616145 209 ntBASIC1.84□□□□□ -2.11
SOX3P41225 AC087588.2-201ENST00000617667 426 ntBASIC1.84□□□□□ -2.11
SOX3P41225 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.12
SOX3P41225 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
SOX3P41225 AP006437.1-201ENST00000641440 3685 ntBASIC1.84□□□□□ -2.12
SOX3P41225 RNU6-545P-201ENST00000362681 104 ntBASIC1.83□□□□□ -2.12
SOX3P41225 Y_RNA.138-201ENST00000363462 102 ntBASIC1.83□□□□□ -2.12
SOX3P41225 Y_RNA.358-201ENST00000365491 99 ntBASIC1.83□□□□□ -2.12
SOX3P41225 SNORA67.2-201ENST00000384300 149 ntBASIC1.83□□□□□ -2.12
SOX3P41225 SNORD14D-201ENST00000384390 87 ntBASIC1.83□□□□□ -2.12
SOX3P41225 RNU6-1026P-201ENST00000384465 108 ntBASIC1.83□□□□□ -2.12
SOX3P41225 MIR625-201ENST00000385047 85 ntBASIC1.83□□□□□ -2.12
SOX3P41225 SNORA40.19-201ENST00000390846 128 ntBASIC1.83□□□□□ -2.12
SOX3P41225 HMGN2P39-201ENST00000398005 273 ntBASIC1.83□□□□□ -2.12
SOX3P41225 RNU2-40P-201ENST00000410833 196 ntBASIC1.83□□□□□ -2.12
SOX3P41225 RNA5SP270-201ENST00000411361 118 ntBASIC1.83□□□□□ -2.12
SOX3P41225 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.83□□□□□ -2.12
SOX3P41225 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.83□□□□□ -2.12
SOX3P41225 MRPS18CP6-201ENST00000423587 223 ntBASIC1.83□□□□□ -2.12
SOX3P41225 AL445305.1-201ENST00000432577 575 ntBASIC1.83□□□□□ -2.12
SOX3P41225 AC099799.1-201ENST00000439809 192 ntBASIC1.83□□□□□ -2.12
SOX3P41225 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.83□□□□□ -2.12
SOX3P41225 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.83□□□□□ -2.12
SOX3P41225 RNU7-4P-201ENST00000516961 62 ntBASIC1.83□□□□□ -2.12
SOX3P41225 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.83□□□□□ -2.12
SOX3P41225 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.83□□□□□ -2.12
SOX3P41225 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.83□□□□□ -2.12
SOX3P41225 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
SOX3P41225 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
SOX3P41225 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
SOX3P41225 RNU6-1115P-201ENST00000362490 106 ntBASIC1.82□□□□□ -2.12
SOX3P41225 Y_RNA.197-201ENST00000364004 102 ntBASIC1.82□□□□□ -2.12
SOX3P41225 MIR29C-201ENST00000385231 88 ntBASIC1.82□□□□□ -2.12
SOX3P41225 SUMO2P12-201ENST00000405924 140 ntBASIC1.82□□□□□ -2.12
SOX3P41225 MIR1283-1-201ENST00000408494 87 ntBASIC1.82□□□□□ -2.12
SOX3P41225 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.82□□□□□ -2.12
SOX3P41225 UBE2V1P7-201ENST00000446395 340 ntBASIC1.82□□□□□ -2.12
SOX3P41225 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.82□□□□□ -2.12
SOX3P41225 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.82□□□□□ -2.12
SOX3P41225 U8.22-201ENST00000459141 133 ntBASIC1.82□□□□□ -2.12
SOX3P41225 RNU7-87P-201ENST00000459343 62 ntBASIC1.82□□□□□ -2.12
SOX3P41225 RN7SL274P-201ENST00000492268 272 ntBASIC1.82□□□□□ -2.12
SOX3P41225 AC105758.1-201ENST00000506038 399 ntBASIC1.82□□□□□ -2.12
SOX3P41225 RNU6-1170P-201ENST00000515974 106 ntBASIC1.82□□□□□ -2.12
SOX3P41225 MIR2355-201ENST00000517199 87 ntBASIC1.82□□□□□ -2.12
SOX3P41225 SNORA31.25-201ENST00000517242 134 ntBASIC1.82□□□□□ -2.12
SOX3P41225 AC144568.1-201ENST00000520139 137 ntBASIC1.82□□□□□ -2.12
SOX3P41225 MIR5695-201ENST00000579717 85 ntBASIC1.82□□□□□ -2.12
SOX3P41225 SNRPGP19-201ENST00000603826 189 ntBASIC1.82□□□□□ -2.12
SOX3P41225 AL080274.1-201ENST00000605565 220 ntBASIC1.82□□□□□ -2.12
SOX3P41225 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.82□□□□□ -2.12
SOX3P41225 AC091925.1-201ENST00000623204 462 ntBASIC1.82□□□□□ -2.12
SOX3P41225 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
SOX3P41225 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
SOX3P41225 MIR340-201ENST00000362125 95 ntBASIC1.81□□□□□ -2.12
SOX3P41225 Y_RNA.5-201ENST00000362334 102 ntBASIC1.81□□□□□ -2.12
SOX3P41225 Y_RNA.179-201ENST00000363844 90 ntBASIC1.81□□□□□ -2.12
SOX3P41225 RNU6-1164P-201ENST00000364428 107 ntBASIC1.81□□□□□ -2.12
SOX3P41225 RNU6-793P-201ENST00000384233 104 ntBASIC1.81□□□□□ -2.12
SOX3P41225 Y_RNA.460-201ENST00000384255 102 ntBASIC1.81□□□□□ -2.12
SOX3P41225 Y_RNA.496-201ENST00000384444 101 ntBASIC1.81□□□□□ -2.12
SOX3P41225 MIR586-201ENST00000385035 97 ntBASIC1.81□□□□□ -2.12
SOX3P41225 MIR504-201ENST00000385065 83 ntBASIC1.81□□□□□ -2.12
SOX3P41225 SNORA69.1-201ENST00000390904 137 ntBASIC1.81□□□□□ -2.12
SOX3P41225 SNORD23.1-201ENST00000408212 104 ntBASIC1.81□□□□□ -2.12
SOX3P41225 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.81□□□□□ -2.12
SOX3P41225 AC114482.1-201ENST00000418010 247 ntBASIC1.81□□□□□ -2.12
SOX3P41225 MTND4P28-201ENST00000426217 387 ntBASIC1.81□□□□□ -2.12
SOX3P41225 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.81□□□□□ -2.12
SOX3P41225 MTCO1P44-201ENST00000441935 243 ntBASIC1.81□□□□□ -2.12
SOX3P41225 AC007395.1-201ENST00000451333 677 ntBASIC1.81□□□□□ -2.12
SOX3P41225 HMGN1P13-201ENST00000505795 138 ntBASIC1.81□□□□□ -2.12
SOX3P41225 RNU6-976P-201ENST00000516086 111 ntBASIC1.81□□□□□ -2.12
SOX3P41225 RNU7-193P-201ENST00000516723 65 ntBASIC1.81□□□□□ -2.12
SOX3P41225 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.81□□□□□ -2.12
SOX3P41225 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.81□□□□□ -2.12
SOX3P41225 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.81□□□□□ -2.12
SOX3P41225 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
SOX3P41225 MIR5089-201ENST00000580047 84 ntBASIC1.81□□□□□ -2.12
SOX3P41225 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.81□□□□□ -2.12
SOX3P41225 AC010999.1-201ENST00000611856 324 ntBASIC1.81□□□□□ -2.12
SOX3P41225 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.81□□□□□ -2.12
SOX3P41225 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.81□□□□□ -2.12
SOX3P41225 AL160413.1-201ENST00000622780 310 ntBASIC1.81□□□□□ -2.12
SOX3P41225 AC090574.1-201ENST00000623186 233 ntBASIC1.81□□□□□ -2.12
SOX3P41225 LINC02555-201ENST00000563933 1951 ntBASIC1.8□□□□□ -2.12
SOX3P41225 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
SOX3P41225 MIR369-201ENST00000362155 70 ntBASIC1.8□□□□□ -2.12
SOX3P41225 Y_RNA.31-201ENST00000362574 102 ntBASIC1.8□□□□□ -2.12
SOX3P41225 SNORD114-6-201ENST00000364393 72 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms