Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC-0.71□□□□□ -2.52
CUX1P39880 RNU6-1278P-201ENST00000516130 107 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 RNU6-977P-201ENST00000516411 103 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 Y_RNA.687-201ENST00000516558 91 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 RNU6-914P-201ENST00000516749 109 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 MTCO3P15-201ENST00000526563 574 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 AC022893.3-201ENST00000607665 437 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 AC083799.1-201ENST00000366451 910 ntBASIC-0.72□□□□□ -2.52
CUX1P39880 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.72□□□□□ -2.52
CUX1P39880 SNORA75B-201ENST00000384053 137 ntBASIC-0.72□□□□□ -2.52
CUX1P39880 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.72□□□□□ -2.52
CUX1P39880 MTND4P15-201ENST00000437913 1033 ntBASIC-0.72□□□□□ -2.52
CUX1P39880 MTND2P20-201ENST00000440805 661 ntBASIC-0.72□□□□□ -2.52
CUX1P39880 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC-0.72□□□□□ -2.52
CUX1P39880 AC069271.1-201ENST00000445577 156 ntBASIC-0.72□□□□□ -2.52
CUX1P39880 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.72□□□□□ -2.52
CUX1P39880 AC079382.1-201ENST00000493346 557 ntBASIC-0.72□□□□□ -2.52
CUX1P39880 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC-0.72□□□□□ -2.52
CUX1P39880 RNU7-12P-201ENST00000516030 62 ntBASIC-0.72□□□□□ -2.52
CUX1P39880 RNU6-64P-201ENST00000517119 105 ntBASIC-0.72□□□□□ -2.52
CUX1P39880 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC-0.72□□□□□ -2.52
CUX1P39880 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC-0.72□□□□□ -2.52
CUX1P39880 SNORA28-201ENST00000606769 126 ntBASIC-0.72□□□□□ -2.52
CUX1P39880 MIR3666-201ENST00000607845 111 ntBASIC-0.72□□□□□ -2.52
CUX1P39880 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.72□□□□□ -2.52
CUX1P39880 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.72□□□□□ -2.52
CUX1P39880 RNU6-369P-201ENST00000362515 102 ntBASIC-0.73□□□□□ -2.53
CUX1P39880 RNU6-527P-201ENST00000363425 104 ntBASIC-0.73□□□□□ -2.53
CUX1P39880 RNU4-84P-201ENST00000364200 139 ntBASIC-0.73□□□□□ -2.53
CUX1P39880 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.73□□□□□ -2.53
CUX1P39880 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC-0.73□□□□□ -2.53
CUX1P39880 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC-0.73□□□□□ -2.53
CUX1P39880 AC245047.3-201ENST00000429428 127 ntBASIC-0.73□□□□□ -2.53
CUX1P39880 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC-0.73□□□□□ -2.53
CUX1P39880 MTND4P32-201ENST00000437189 1237 ntBASIC-0.73□□□□□ -2.53
CUX1P39880 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC-0.73□□□□□ -2.53
CUX1P39880 AC087499.4-201ENST00000448505 178 ntBASIC-0.73□□□□□ -2.53
CUX1P39880 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.73□□□□□ -2.53
CUX1P39880 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC-0.73□□□□□ -2.53
CUX1P39880 MIR15A-201ENST00000607334 83 ntBASIC-0.73□□□□□ -2.53
CUX1P39880 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC-0.73□□□□□ -2.53
CUX1P39880 AC008250.2-201ENST00000615261 205 ntBASIC-0.73□□□□□ -2.53
CUX1P39880 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC-0.73□□□□□ -2.53
CUX1P39880 AL359697.1-201ENST00000624879 587 ntBASIC-0.73□□□□□ -2.53
CUX1P39880 AC112487.2-201ENST00000637950 304 ntBASIC-0.73□□□□□ -2.53
CUX1P39880 SNORD51.1-201ENST00000365405 77 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 RNU6-378P-201ENST00000384324 107 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 RNU6-480P-201ENST00000384332 107 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 MIR19A-201ENST00000384878 82 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 U8.16-201ENST00000391279 133 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 MIR1253-201ENST00000408273 105 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 ZNF885P-201ENST00000420174 1098 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC-0.74□□□□□ -2.53
CUX1P39880 AC119618.1-201ENST00000434191 222 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 RPL17P19-201ENST00000489069 552 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 SNORD111.1-201ENST00000516421 86 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 RNU6-1069P-201ENST00000516612 133 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC-0.74□□□□□ -2.53
CUX1P39880 MRPS36P4-201ENST00000534436 298 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC-0.74□□□□□ -2.53
CUX1P39880 AL391840.1-201ENST00000571144 367 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 MESTIT1_1.1-201ENST00000618871 140 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 RNU1-76P-201ENST00000362903 159 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 Y_RNA.203-201ENST00000364106 102 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 SNORA2B-201ENST00000384583 137 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 MIR10A-201ENST00000385043 110 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 MIR454-201ENST00000390180 115 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 RNU4-30P-201ENST00000410245 143 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 AL590135.1-201ENST00000422215 156 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 AC019205.3-201ENST00000424573 156 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 AC016700.2-201ENST00000446011 156 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC-0.74□□□□□ -2.53
CUX1P39880 AL392103.1-201ENST00000447000 198 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 MTND2P6-201ENST00000455337 1030 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 RNU7-94P-201ENST00000459576 63 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 AC015911.1-201ENST00000495111 156 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 RNU6-583P-201ENST00000516012 92 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC-0.74□□□□□ -2.53
CUX1P39880 AL022154.1-201ENST00000604698 785 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 AC104073.3-201ENST00000610942 955 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 AC112204.3-201ENST00000623822 332 ntBASIC-0.74□□□□□ -2.53
CUX1P39880 FER-210ENST00000628534 558 ntTSL 5 BASIC-0.74□□□□□ -2.53
CUX1P39880 NAA50-211ENST00000630058 177 ntTSL 5 BASIC-0.74□□□□□ -2.53
CUX1P39880 RNU6-424P-201ENST00000384367 105 ntBASIC-0.75□□□□□ -2.53
CUX1P39880 CDK8P2-201ENST00000415020 547 ntBASIC-0.75□□□□□ -2.53
CUX1P39880 AC078809.1-201ENST00000427601 140 ntBASIC-0.75□□□□□ -2.53
CUX1P39880 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC-0.75□□□□□ -2.53
CUX1P39880 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC-0.75□□□□□ -2.53
CUX1P39880 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC-0.75□□□□□ -2.53
CUX1P39880 AC008752.3-201ENST00000588113 712 ntBASIC-0.75□□□□□ -2.53
CUX1P39880 uc_338.28-201ENST00000612082 187 ntBASIC-0.75□□□□□ -2.53
CUX1P39880 U4.2-201ENST00000618561 85 ntBASIC-0.75□□□□□ -2.53
CUX1P39880 AC024940.5-201ENST00000622889 474 ntBASIC-0.75□□□□□ -2.53
CUX1P39880 AP000568.1-201ENST00000282964 442 ntBASIC-0.76□□□□□ -2.53
CUX1P39880 RNU6-562P-201ENST00000362731 107 ntBASIC-0.76□□□□□ -2.53
CUX1P39880 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC-0.76□□□□□ -2.53
CUX1P39880 MIR1283-1-201ENST00000408494 87 ntBASIC-0.76□□□□□ -2.53
CUX1P39880 RNU4-22P-201ENST00000411058 166 ntBASIC-0.76□□□□□ -2.53
CUX1P39880 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC-0.76□□□□□ -2.53
CUX1P39880 AC104563.1-201ENST00000476147 376 ntBASIC-0.76□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 153.2 ms