Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 SNORD11B-201ENST00000607707 90 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXD3P31249 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 AC006001.4-201ENST00000622243 395 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 IGHVIII-44-202ENST00000636235 289 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
HOXD3P31249 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
HOXD3P31249 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXD3P31249 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
HOXD3P31249 Y_RNA.230-201ENST00000364348 109 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 SNORA72.2-201ENST00000365028 127 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 RNU6-290P-201ENST00000365212 101 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 MIR29B2-201ENST00000385055 81 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 MIR548B-201ENST00000385247 97 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 RN7SKP123-201ENST00000410732 291 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 MRPS10P1-201ENST00000448483 130 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 AC023141.11-201ENST00000508864 202 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.25□□□□□ -2.05
HOXD3P31249 SERF1AP1-201ENST00000514575 187 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 RNU5F-4P-201ENST00000516581 114 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 RNU6-344P-201ENST00000516635 111 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 CYCSP23-201ENST00000519781 313 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.25□□□□□ -2.05
HOXD3P31249 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.25□□□□□ -2.05
HOXD3P31249 MIR3145-201ENST00000580727 82 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 AL109918.3-201ENST00000603072 338 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 AC069294.1-201ENST00000608397 350 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 AC013412.1-201ENST00000610687 192 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
HOXD3P31249 AC068205.3-201ENST00000636385 468 ntBASIC2.25□□□□□ -2.05
HOXD3P31249 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXD3P31249 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.25□□□□□ -2.05
HOXD3P31249 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
HOXD3P31249 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.24□□□□□ -2.05
HOXD3P31249 Y_RNA.65-201ENST00000362846 100 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 Y_RNA.257-201ENST00000364596 102 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 RNU6-338P-201ENST00000383888 105 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 Y_RNA.416-201ENST00000384014 113 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 RNU6-1026P-201ENST00000384465 108 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 Y_RNA.569-201ENST00000384749 103 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 MIR1294-201ENST00000408503 142 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 RNA5SP475-201ENST00000410568 110 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 AC009969.1-201ENST00000438726 172 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.24□□□□□ -2.05
HOXD3P31249 AL139109.1-201ENST00000455491 297 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 RNU7-14P-201ENST00000459331 62 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 ATP5EP1-201ENST00000510257 156 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.24□□□□□ -2.05
HOXD3P31249 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.24□□□□□ -2.05
HOXD3P31249 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.24□□□□□ -2.05
HOXD3P31249 MIR3668-201ENST00000582138 75 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.24□□□□□ -2.05
HOXD3P31249 AC127459.3-201ENST00000624328 466 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 MIR1248-201ENST00000629190 106 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 MIR3674-201ENST00000636576 68 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.24□□□□□ -2.05
HOXD3P31249 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
HOXD3P31249 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
HOXD3P31249 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
HOXD3P31249 AC010329.5-201ENST00000623497 2174 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
HOXD3P31249 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
HOXD3P31249 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
HOXD3P31249 RNU1-23P-201ENST00000363361 144 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 RNU6-1305P-201ENST00000364353 104 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 SNORA51.4-201ENST00000364993 124 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 Y_RNA.383-201ENST00000383855 97 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 Y_RNA.418-201ENST00000384029 102 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 MT-TR-201ENST00000387439 65 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 RNU6-220P-201ENST00000390919 107 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
HOXD3P31249 RN7SKP284-201ENST00000411002 343 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 RNU6-651P-201ENST00000411040 105 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 RNU2-14P-201ENST00000411053 191 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 RNA5SP184-201ENST00000411071 108 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 AC087499.2-201ENST00000432861 149 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.23□□□□□ -2.05
HOXD3P31249 AC108938.1-201ENST00000451204 136 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 RN7SKP43-201ENST00000516173 320 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 RPL21P9-201ENST00000556149 474 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
HOXD3P31249 MIR3616-201ENST00000584070 92 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 MIR7157-201ENST00000635801 60 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.23□□□□□ -2.05
HOXD3P31249 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.23□□□□□ -2.05
HOXD3P31249 AC108206.1-201ENST00000570186 4159 ntBASIC2.23□□□□□ -2.05
HOXD3P31249 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.22□□□□□ -2.05
HOXD3P31249 Y_RNA.20-201ENST00000362479 113 ntBASIC2.22□□□□□ -2.05
HOXD3P31249 RNU6-1266P-201ENST00000362794 105 ntBASIC2.22□□□□□ -2.05
HOXD3P31249 RNU6-743P-201ENST00000364151 106 ntBASIC2.22□□□□□ -2.05
HOXD3P31249 RNU6-234P-201ENST00000365229 104 ntBASIC2.22□□□□□ -2.05
HOXD3P31249 RPL23AP36-201ENST00000413895 458 ntBASIC2.22□□□□□ -2.05
HOXD3P31249 AL139281.1-201ENST00000422120 335 ntBASIC2.22□□□□□ -2.05
HOXD3P31249 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.22□□□□□ -2.05
HOXD3P31249 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXD3P31249 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.22□□□□□ -2.05
HOXD3P31249 RNU6-155P-201ENST00000516347 100 ntBASIC2.22□□□□□ -2.05
HOXD3P31249 MIR3162-201ENST00000581818 82 ntBASIC2.22□□□□□ -2.05
HOXD3P31249 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms