Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MIR320B2-201ENST00000408479 138 ntBASIC1.38□□□□□ -2.19
MSH4O15457 AL590632.1-201ENST00000424289 371 ntBASIC1.38□□□□□ -2.19
MSH4O15457 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.38□□□□□ -2.19
MSH4O15457 HMGN2P9-201ENST00000476875 229 ntBASIC1.38□□□□□ -2.19
MSH4O15457 ZNF204P-201ENST00000416749 2397 ntBASIC1.37□□□□□ -2.19
MSH4O15457 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.37□□□□□ -2.19
MSH4O15457 SNORD50.1-201ENST00000362987 71 ntBASIC1.37□□□□□ -2.19
MSH4O15457 Y_RNA.402-201ENST00000383972 102 ntBASIC1.37□□□□□ -2.19
MSH4O15457 RNU6-975P-201ENST00000384296 105 ntBASIC1.37□□□□□ -2.19
MSH4O15457 RNU6-1235P-201ENST00000384559 107 ntBASIC1.37□□□□□ -2.19
MSH4O15457 MIR181A1-201ENST00000385026 110 ntBASIC1.37□□□□□ -2.19
MSH4O15457 RNU6-360P-201ENST00000390944 104 ntBASIC1.37□□□□□ -2.19
MSH4O15457 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.37□□□□□ -2.19
MSH4O15457 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.37□□□□□ -2.19
MSH4O15457 MTCO3P18-201ENST00000440206 761 ntBASIC1.37□□□□□ -2.19
MSH4O15457 AC074290.1-201ENST00000448883 135 ntBASIC1.37□□□□□ -2.19
MSH4O15457 RPS29P23-201ENST00000458635 123 ntBASIC1.37□□□□□ -2.19
MSH4O15457 RNU6-498P-201ENST00000459468 107 ntBASIC1.37□□□□□ -2.19
MSH4O15457 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.37□□□□□ -2.19
MSH4O15457 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.37□□□□□ -2.19
MSH4O15457 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.37□□□□□ -2.19
MSH4O15457 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.37□□□□□ -2.19
MSH4O15457 AC068790.6-201ENST00000602558 258 ntBASIC1.37□□□□□ -2.19
MSH4O15457 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.37□□□□□ -2.19
MSH4O15457 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.37□□□□□ -2.19
MSH4O15457 AL353149.1-201ENST00000610667 244 ntBASIC1.37□□□□□ -2.19
MSH4O15457 AL138726.1-201ENST00000614873 333 ntBASIC1.37□□□□□ -2.19
MSH4O15457 Y_RNA.9-201ENST00000362354 101 ntBASIC1.36□□□□□ -2.19
MSH4O15457 MIR548B-201ENST00000385247 97 ntBASIC1.36□□□□□ -2.19
MSH4O15457 CST2P1-201ENST00000425770 87 ntBASIC1.36□□□□□ -2.19
MSH4O15457 MTCO3P29-201ENST00000432119 779 ntBASIC1.36□□□□□ -2.19
MSH4O15457 MTND3P21-201ENST00000433774 331 ntBASIC1.36□□□□□ -2.19
MSH4O15457 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC1.36□□□□□ -2.19
MSH4O15457 HSPE1P24-201ENST00000450782 238 ntBASIC1.36□□□□□ -2.19
MSH4O15457 AC079354.2-201ENST00000453523 154 ntBASIC1.36□□□□□ -2.19
MSH4O15457 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.36□□□□□ -2.19
MSH4O15457 MTND1P11-201ENST00000456661 876 ntBASIC1.36□□□□□ -2.19
MSH4O15457 RNU7-66P-201ENST00000459469 62 ntBASIC1.36□□□□□ -2.19
MSH4O15457 RPL26P26-201ENST00000480251 434 ntBASIC1.36□□□□□ -2.19
MSH4O15457 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.36□□□□□ -2.19
MSH4O15457 RNU6-256P-201ENST00000516747 97 ntBASIC1.36□□□□□ -2.19
MSH4O15457 AC090821.2-201ENST00000523552 176 ntBASIC1.36□□□□□ -2.19
MSH4O15457 AC109635.3-201ENST00000529536 185 ntBASIC1.36□□□□□ -2.19
MSH4O15457 SNORA77B-201ENST00000578179 125 ntBASIC1.36□□□□□ -2.19
MSH4O15457 POLR3GP2-201ENST00000588366 668 ntBASIC1.36□□□□□ -2.19
MSH4O15457 MIR338-201ENST00000636369 67 ntBASIC1.36□□□□□ -2.19
MSH4O15457 AC073869.6-201ENST00000640656 341 ntBASIC1.36□□□□□ -2.19
MSH4O15457 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
MSH4O15457 Y_RNA.67-201ENST00000362870 100 ntBASIC1.35□□□□□ -2.19
MSH4O15457 RNY4P14-201ENST00000363656 96 ntBASIC1.35□□□□□ -2.19
MSH4O15457 SNORA63D-201ENST00000364359 132 ntBASIC1.35□□□□□ -2.19
MSH4O15457 Y_RNA.295-201ENST00000364918 102 ntBASIC1.35□□□□□ -2.19
MSH4O15457 Y_RNA.450-201ENST00000384198 113 ntBASIC1.35□□□□□ -2.19
MSH4O15457 MIR586-201ENST00000385035 97 ntBASIC1.35□□□□□ -2.19
MSH4O15457 RNU1-78P-201ENST00000391248 165 ntBASIC1.35□□□□□ -2.19
MSH4O15457 MIR1287-201ENST00000408492 90 ntBASIC1.35□□□□□ -2.19
MSH4O15457 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.35□□□□□ -2.19
MSH4O15457 ZNF885P-201ENST00000420174 1098 ntBASIC1.35□□□□□ -2.19
MSH4O15457 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.35□□□□□ -2.19
MSH4O15457 JTBP1-201ENST00000441314 247 ntBASIC1.35□□□□□ -2.19
MSH4O15457 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.35□□□□□ -2.19
MSH4O15457 MTCO2P30-201ENST00000503662 364 ntBASIC1.35□□□□□ -2.19
MSH4O15457 Y_RNA.673-201ENST00000516306 88 ntBASIC1.35□□□□□ -2.19
MSH4O15457 RNA5SP481-201ENST00000516814 122 ntBASIC1.35□□□□□ -2.19
MSH4O15457 RNU6-273P-201ENST00000516937 96 ntBASIC1.35□□□□□ -2.19
MSH4O15457 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.35□□□□□ -2.19
MSH4O15457 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.35□□□□□ -2.19
MSH4O15457 MIR4422-201ENST00000581938 83 ntBASIC1.35□□□□□ -2.19
MSH4O15457 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.35□□□□□ -2.19
MSH4O15457 AP001485.1-201ENST00000604799 199 ntBASIC1.35□□□□□ -2.19
MSH4O15457 AC006001.4-201ENST00000622243 395 ntBASIC1.35□□□□□ -2.19
MSH4O15457 AC068137.4-201ENST00000638485 296 ntBASIC1.35□□□□□ -2.19
MSH4O15457 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.35□□□□□ -2.19
MSH4O15457 AC100821.1-201ENST00000523153 2479 ntBASIC1.35□□□□□ -2.19
MSH4O15457 AC027514.1-201ENST00000588561 1603 ntBASIC1.35□□□□□ -2.19
MSH4O15457 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.35□□□□□ -2.19
MSH4O15457 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
MSH4O15457 Y_RNA.89-201ENST00000363031 102 ntBASIC1.34□□□□□ -2.19
MSH4O15457 Y_RNA.453-201ENST00000384223 109 ntBASIC1.34□□□□□ -2.19
MSH4O15457 MIR517A-201ENST00000385001 87 ntBASIC1.34□□□□□ -2.19
MSH4O15457 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.34□□□□□ -2.19
MSH4O15457 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.34□□□□□ -2.19
MSH4O15457 FTH1P12-201ENST00000432137 551 ntBASIC1.34□□□□□ -2.19
MSH4O15457 DAP3P1-201ENST00000441522 278 ntBASIC1.34□□□□□ -2.19
MSH4O15457 AC069257.2-201ENST00000441819 155 ntBASIC1.34□□□□□ -2.19
MSH4O15457 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.34□□□□□ -2.19
MSH4O15457 AC093852.1-201ENST00000503587 266 ntBASIC1.34□□□□□ -2.19
MSH4O15457 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.34□□□□□ -2.19
MSH4O15457 RNU1-117P-201ENST00000517041 158 ntBASIC1.34□□□□□ -2.19
MSH4O15457 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.34□□□□□ -2.19
MSH4O15457 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.34□□□□□ -2.19
MSH4O15457 MIR3672-201ENST00000584290 82 ntBASIC1.34□□□□□ -2.19
MSH4O15457 MIR6078-201ENST00000611069 100 ntBASIC1.34□□□□□ -2.19
MSH4O15457 MIR8063-201ENST00000621930 81 ntBASIC1.34□□□□□ -2.19
MSH4O15457 AC090617.10-201ENST00000624308 134 ntBASIC1.34□□□□□ -2.19
MSH4O15457 AL078596.1-201ENST00000624856 447 ntBASIC1.34□□□□□ -2.19
MSH4O15457 AC100810.6-201ENST00000638068 285 ntBASIC1.34□□□□□ -2.19
MSH4O15457 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.34□□□□□ -2.19
MSH4O15457 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.34□□□□□ -2.2
MSH4O15457 snoU2-30.2-201ENST00000362805 70 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 174.8 ms