Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 RN7SL442P-201ENST00000473804 320 ntBASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 SNORA31.8-201ENST00000516327 108 ntBASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 RNU6-572P-201ENST00000516724 80 ntBASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 AP001328.1-201ENST00000528550 176 ntBASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL17A1Q9UMD9 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.21□□□□□ -1.73
COL17A1Q9UMD9 AL136964.1-201ENST00000622038 2990 ntBASIC4.21□□□□□ -1.74
COL17A1Q9UMD9 Y_RNA.558-201ENST00000384685 113 ntBASIC4.21□□□□□ -1.74
COL17A1Q9UMD9 RNA5SP425-201ENST00000410336 112 ntBASIC4.21□□□□□ -1.74
COL17A1Q9UMD9 RNU4-53P-201ENST00000410828 140 ntBASIC4.21□□□□□ -1.74
COL17A1Q9UMD9 AC109327.2-201ENST00000448339 378 ntBASIC4.21□□□□□ -1.74
COL17A1Q9UMD9 RNA5SP165-201ENST00000517142 115 ntBASIC4.21□□□□□ -1.74
COL17A1Q9UMD9 AC106754.2-201ENST00000623006 233 ntBASIC4.21□□□□□ -1.74
COL17A1Q9UMD9 AP001340.1-201ENST00000624405 217 ntBASIC4.21□□□□□ -1.74
COL17A1Q9UMD9 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC4.21□□□□□ -1.74
COL17A1Q9UMD9 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 RNU6-879P-201ENST00000364328 108 ntBASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 Y_RNA.294-201ENST00000364916 102 ntBASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 RNU6-1175P-201ENST00000365200 107 ntBASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 RNU6-805P-201ENST00000365643 106 ntBASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 RNU6-49P-201ENST00000384256 107 ntBASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 RNU6-376P-201ENST00000384731 106 ntBASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 Y_RNA.570-201ENST00000384750 101 ntBASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 SNORA46-201ENST00000384762 135 ntBASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 RPS4XP3-201ENST00000398541 413 ntBASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 RPS20P10-201ENST00000451209 253 ntBASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 U7.2-201ENST00000607576 63 ntBASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 AC046143.2-201ENST00000609789 160 ntBASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 CUL1P1-201ENST00000509510 2425 ntBASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC4.2□□□□□ -1.74
COL17A1Q9UMD9 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 SNORA25.7-201ENST00000364375 127 ntBASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 RNU6-20P-201ENST00000384106 107 ntBASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 SNORD12B-201ENST00000410433 91 ntBASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 RPS15AP5-201ENST00000436276 388 ntBASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 AC009237.8-201ENST00000445492 379 ntBASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 HIGD1AP2-201ENST00000446367 280 ntBASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 AL645939.1-201ENST00000453429 797 ntBASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 AC092798.1-201ENST00000458542 409 ntBASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 SNORD33.1-201ENST00000516213 88 ntBASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 AC092593.1-201ENST00000515413 1815 ntBASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL17A1Q9UMD9 RNA5SP383-201ENST00000362934 120 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 RNU6-1180P-201ENST00000364935 107 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 RNU6-166P-201ENST00000384371 107 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 SNORD116-21-201ENST00000384507 92 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 MIR518C-201ENST00000384822 101 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 RPL32P35-201ENST00000415214 394 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 AC098614.2-201ENST00000426040 255 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 RPS15AP7-201ENST00000439294 405 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 AC090525.1-201ENST00000479116 478 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 AC078817.1-201ENST00000492623 435 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 MIR4782-201ENST00000577987 79 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 U6.99-201ENST00000637524 83 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 ZNF204P-201ENST00000416749 2397 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 Y_RNA.123-201ENST00000363338 102 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 RNY1P11-201ENST00000363759 113 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 Y_RNA.337-201ENST00000365312 102 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 RNU6-578P-201ENST00000390980 103 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 RNU6-592P-201ENST00000411333 103 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 BTF3P11-201ENST00000426582 477 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 RPL26P26-201ENST00000480251 434 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 SNORA40.9-201ENST00000515895 93 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 AC110741.2-201ENST00000605278 268 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 uc_338.28-201ENST00000612082 187 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 U6.95-201ENST00000636931 70 ntBASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC4.18□□□□□ -1.74
COL17A1Q9UMD9 AC080128.1-201ENST00000474389 1917 ntBASIC4.17□□□□□ -1.74
COL17A1Q9UMD9 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
COL17A1Q9UMD9 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL17A1Q9UMD9 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.17□□□□□ -1.74
COL17A1Q9UMD9 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.17□□□□□ -1.74
COL17A1Q9UMD9 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC4.17□□□□□ -1.74
COL17A1Q9UMD9 HMGB1P22-201ENST00000505315 124 ntBASIC4.17□□□□□ -1.74
COL17A1Q9UMD9 RNU6-772P-201ENST00000516042 105 ntBASIC4.17□□□□□ -1.74
COL17A1Q9UMD9 RNA5SP320-201ENST00000516263 124 ntBASIC4.17□□□□□ -1.74
COL17A1Q9UMD9 RNU6-191P-201ENST00000516295 94 ntBASIC4.17□□□□□ -1.74
COL17A1Q9UMD9 SNORA31.21-201ENST00000517180 77 ntBASIC4.17□□□□□ -1.74
COL17A1Q9UMD9 RNU2-60P-201ENST00000517290 128 ntBASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms