Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 SSXP5-201ENST00000443473 287 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 AC009237.7-201ENST00000447357 229 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 AC115115.1-201ENST00000449927 248 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 Y_RNA.641-201ENST00000459414 105 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 RPS29P2-201ENST00000479278 136 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 SNORA40.9-201ENST00000515895 93 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 RNU6-966P-201ENST00000516479 104 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 AP001485.1-201ENST00000604799 199 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 AL357075.2-201ENST00000614906 189 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 AC073349.3-201ENST00000617616 186 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 MAPK10-266ENST00000641066 6555 ntBASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 RNU6-137P-201ENST00000363680 108 ntBASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 Y_RNA.230-201ENST00000364348 109 ntBASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 Y_RNA.319-201ENST00000365138 92 ntBASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 SNORA36A-201ENST00000384221 132 ntBASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 RNU4-47P-201ENST00000410876 114 ntBASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 OOSP1P1-201ENST00000423265 274 ntBASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 TRAPPC2P7-201ENST00000509650 231 ntBASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 RNU6-58P-201ENST00000517143 103 ntBASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 AC055872.1-201ENST00000570978 278 ntBASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 MIR5695-201ENST00000579717 85 ntBASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 AL162274.2-201ENST00000614406 332 ntBASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 MIR5739-201ENST00000619803 80 ntBASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
CLIP3Q96DZ5 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 snoU2_19.1-201ENST00000362361 80 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 RNA5SP374-201ENST00000362939 125 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 SNORD115-8-201ENST00000363856 82 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 SNORD56.5-201ENST00000364281 72 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 Y_RNA.304-201ENST00000365011 112 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 SNORD115-38-201ENST00000365037 82 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 Y_RNA.308-201ENST00000365043 101 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 RNU6-514P-201ENST00000384208 107 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 MIR29B2-201ENST00000385055 81 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 SNORA48.5-201ENST00000391143 135 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 NDUFB4P4-201ENST00000404822 243 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 BMS1P22-201ENST00000414726 313 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 AL390729.2-201ENST00000416137 156 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 AC012306.1-201ENST00000423267 114 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 AC091826.1-201ENST00000514065 313 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 SNORA64.4-201ENST00000516632 81 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 AC245166.1-201ENST00000521012 253 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 MIR5004-201ENST00000579078 107 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 MIR3923-201ENST00000579521 83 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 uc_338.1-201ENST00000612113 180 ntBASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CLIP3Q96DZ5 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 AL365361.1-201ENST00000566942 3481 ntBASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 RNU6-653P-201ENST00000363074 106 ntBASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 SNORD56.3-201ENST00000363507 71 ntBASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 RNU6-541P-201ENST00000384709 110 ntBASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 SNORA46.1-201ENST00000391069 153 ntBASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 AC007395.1-201ENST00000451333 677 ntBASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 RN7SL863P-201ENST00000462370 296 ntBASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 CENPBD1P1-201ENST00000464061 469 ntBASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 CYP4A27P-201ENST00000567218 190 ntBASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 AC022441.3-201ENST00000605737 136 ntBASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 AL449363.1-201ENST00000617815 186 ntBASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 AC090517.3-201ENST00000625170 141 ntBASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.09□□□□□ -1.91
CLIP3Q96DZ5 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.09□□□□□ -1.92
CLIP3Q96DZ5 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 SNORD50B-201ENST00000364995 70 ntBASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 Y_RNA.331-201ENST00000365267 102 ntBASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 RNU6-1130P-201ENST00000365434 107 ntBASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 Y_RNA.580-201ENST00000391004 95 ntBASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 Y_RNA.597-201ENST00000410463 100 ntBASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 RPL23AP36-201ENST00000413895 458 ntBASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 POLR2KP2-201ENST00000438155 177 ntBASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 AP000705.1-201ENST00000454567 350 ntBASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 CYP2C59P-201ENST00000457790 269 ntBASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 AC090515.1-201ENST00000465295 476 ntBASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 167.4 ms