Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RNU6-948P-201ENST00000516374 107 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 AL442163.3-201ENST00000554110 156 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 SCOCP1-201ENST00000554676 349 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 AC026470.2-201ENST00000561492 181 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 AC145350.1-201ENST00000567426 208 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 CPDP1-201ENST00000579660 283 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 AC104458.1-201ENST00000608243 463 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 AC087683.2-201ENST00000611384 326 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.81□□□□□ -2.28
LMX1AQ8TE12 AC005562.2-201ENST00000618264 111 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 AC012676.2-201ENST00000619258 186 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.81□□□□□ -2.28
LMX1AQ8TE12 RNA5SP327-201ENST00000362494 101 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 RNU1-124P-201ENST00000363861 145 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 RNU1-133P-201ENST00000364867 167 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 RNU6-1329P-201ENST00000365664 107 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 RNU6-1286P-201ENST00000383871 107 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 MRPL35P1-201ENST00000404272 572 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 RN7SKP142-201ENST00000411236 328 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC0.8□□□□□ -2.28
LMX1AQ8TE12 AC090960.1-201ENST00000421072 306 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 AC004941.2-201ENST00000427009 228 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 USP9YP14-201ENST00000430663 563 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 AC073910.1-201ENST00000445047 438 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 snoU13.6-201ENST00000458785 104 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 AC091435.1-201ENST00000505442 584 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 RNA5SP404-201ENST00000517118 132 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 FGF7P1-201ENST00000582820 288 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 AC017083.3-201ENST00000609955 700 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 AL359697.1-201ENST00000624879 587 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.8□□□□□ -2.28
LMX1AQ8TE12 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
LMX1AQ8TE12 AL442644.1-201ENST00000454390 3105 ntBASIC0.8□□□□□ -2.28
LMX1AQ8TE12 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
LMX1AQ8TE12 snoU2-30.2-201ENST00000362805 70 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 Y_RNA.167-201ENST00000363735 109 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
LMX1AQ8TE12 RNU6-1106P-201ENST00000390845 107 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 RNA5SP219-201ENST00000390940 113 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 RNU1-139P-201ENST00000391307 165 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 CDK8P2-201ENST00000415020 547 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 DYNLT3P2-201ENST00000442517 295 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 PGBD4P5-201ENST00000445958 426 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 AC009237.7-201ENST00000447357 229 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.79□□□□□ -2.28
LMX1AQ8TE12 HMGB1P29-201ENST00000505659 499 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 AC091133.4-201ENST00000511142 308 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 RNU6-189P-201ENST00000516120 101 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 SNORA40.12-201ENST00000516329 111 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 AC087854.1-201ENST00000519706 414 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 DEFB108E-201ENST00000524692 240 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 CENPUP1-201ENST00000526649 1202 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC0.79□□□□□ -2.28
LMX1AQ8TE12 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.79□□□□□ -2.28
LMX1AQ8TE12 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.79□□□□□ -2.28
LMX1AQ8TE12 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.79□□□□□ -2.28
LMX1AQ8TE12 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.79□□□□□ -2.28
LMX1AQ8TE12 AL354950.2-201ENST00000617939 290 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 MIR8065-201ENST00000620577 100 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 AC099654.5-201ENST00000636479 350 ntBASIC0.79□□□□□ -2.28
LMX1AQ8TE12 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.79□□□□□ -2.28
LMX1AQ8TE12 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
LMX1AQ8TE12 SNORD114-2-201ENST00000363953 78 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 RNU6-1187P-201ENST00000364771 110 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 Y_RNA.287-201ENST00000364853 94 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 SNORA72.2-201ENST00000365028 127 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 SNORA4.2-201ENST00000365313 147 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 Y_RNA.393-201ENST00000383936 102 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 RNU6-38P-201ENST00000384085 107 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 MIR586-201ENST00000385035 97 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC0.78□□□□□ -2.28
LMX1AQ8TE12 AC073464.1-201ENST00000429823 534 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 HMGN2P34-201ENST00000437647 269 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 AC004386.2-201ENST00000441858 148 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 NFU1P2-201ENST00000448700 469 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.78□□□□□ -2.28
LMX1AQ8TE12 TPTE2P5-203ENST00000458118 728 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 RNU6-1132P-201ENST00000459214 107 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 RPL39P28-201ENST00000465655 155 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 AL163195.1-201ENST00000496941 348 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.78□□□□□ -2.28
LMX1AQ8TE12 UBL5P1-201ENST00000507979 193 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 AC010493.1-201ENST00000513479 292 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 AC024995.1-201ENST00000523014 93 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 AL512310.8-201ENST00000550183 120 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.78□□□□□ -2.28
LMX1AQ8TE12 AL118558.2-201ENST00000556294 238 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 CYP3A52P-201ENST00000563326 91 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 MIR4714-201ENST00000580728 77 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 MIR4753-201ENST00000585119 83 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.78□□□□□ -2.28
LMX1AQ8TE12 AC009033.1-201ENST00000624279 431 ntBASIC0.78□□□□□ -2.28
LMX1AQ8TE12 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.78□□□□□ -2.29
LMX1AQ8TE12 SNORA33-201ENST00000363664 130 ntBASIC0.77□□□□□ -2.29
LMX1AQ8TE12 RNU6-784P-201ENST00000384330 106 ntBASIC0.77□□□□□ -2.29
LMX1AQ8TE12 MIR515-2-201ENST00000384883 83 ntBASIC0.77□□□□□ -2.29
LMX1AQ8TE12 MIR515-1-201ENST00000384884 83 ntBASIC0.77□□□□□ -2.29
LMX1AQ8TE12 AL606923.1-201ENST00000406616 190 ntBASIC0.77□□□□□ -2.29
LMX1AQ8TE12 MTCO1P20-201ENST00000425366 358 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms