Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 MIR2276-201ENST00000516886 89 ntBASIC3.18□□□□□ -1.9
USP53Q70EK8 RNU6-586P-201ENST00000517265 104 ntBASIC3.18□□□□□ -1.9
USP53Q70EK8 DEFB117-201ENST00000602356 141 ntBASIC3.18□□□□□ -1.9
USP53Q70EK8 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.18□□□□□ -1.9
USP53Q70EK8 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP53Q70EK8 AC009487.2-201ENST00000420969 6821 ntBASIC3.18□□□□□ -1.9
USP53Q70EK8 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP53Q70EK8 AL035425.3-201ENST00000564206 4996 ntBASIC3.18□□□□□ -1.9
USP53Q70EK8 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP53Q70EK8 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.18□□□□□ -1.9
USP53Q70EK8 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.17□□□□□ -1.9
USP53Q70EK8 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
USP53Q70EK8 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.17□□□□□ -1.9
USP53Q70EK8 Y_RNA.292-201ENST00000364904 97 ntBASIC3.17□□□□□ -1.9
USP53Q70EK8 MIR218-1-201ENST00000384999 110 ntBASIC3.17□□□□□ -1.9
USP53Q70EK8 MIR548B-201ENST00000385247 97 ntBASIC3.17□□□□□ -1.9
USP53Q70EK8 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
USP53Q70EK8 U3.40-201ENST00000408706 208 ntBASIC3.17□□□□□ -1.9
USP53Q70EK8 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.17□□□□□ -1.9
USP53Q70EK8 PRELID3BP1-201ENST00000457142 540 ntBASIC3.17□□□□□ -1.9
USP53Q70EK8 HMGN2P9-201ENST00000476875 229 ntBASIC3.17□□□□□ -1.9
USP53Q70EK8 RPS29P26-201ENST00000477483 171 ntBASIC3.17□□□□□ -1.9
USP53Q70EK8 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.17□□□□□ -1.9
USP53Q70EK8 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.17□□□□□ -1.9
USP53Q70EK8 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.17□□□□□ -1.9
USP53Q70EK8 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.17□□□□□ -1.9
USP53Q70EK8 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.17□□□□□ -1.9
USP53Q70EK8 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.17□□□□□ -1.9
USP53Q70EK8 CBX3P4-201ENST00000538909 354 ntBASIC3.17□□□□□ -1.9
USP53Q70EK8 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.17□□□□□ -1.9
USP53Q70EK8 AC069294.1-201ENST00000608397 350 ntBASIC3.17□□□□□ -1.9
USP53Q70EK8 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC3.17□□□□□ -1.9
USP53Q70EK8 AC004792.1-201ENST00000614523 137 ntBASIC3.17□□□□□ -1.9
USP53Q70EK8 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP53Q70EK8 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP53Q70EK8 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
USP53Q70EK8 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
USP53Q70EK8 AC110774.1-201ENST00000623567 2018 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 SNORD115-30-201ENST00000364117 82 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 RNU6-1305P-201ENST00000364353 104 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 Y_RNA.243-201ENST00000364481 109 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 SNORA51.4-201ENST00000364993 124 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 Y_RNA.329-201ENST00000365209 107 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 RNU6-234P-201ENST00000365229 104 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 RNU6-662P-201ENST00000384253 104 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 RNU4-70P-201ENST00000384579 139 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 Y_RNA.555-201ENST00000384673 110 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 RNU6-1248P-201ENST00000391096 64 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 Y_RNA.626-201ENST00000411288 95 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 AC025750.2-201ENST00000442609 450 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 Y_RNA.644-201ENST00000459006 113 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 Y_RNA.638-201ENST00000459374 113 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 AC080013.2-201ENST00000460866 323 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 MIR449C-201ENST00000516047 92 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 Y_RNA.674-201ENST00000516362 113 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 Y_RNA.679-201ENST00000516416 91 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 RNA5SP380-201ENST00000517190 98 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 NDUFB9P3-201ENST00000521269 501 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 AC023043.3-201ENST00000593113 385 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 FTX_2.1-201ENST00000618816 94 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
USP53Q70EK8 Z82209.1-201ENST00000422141 2135 ntBASIC3.16□□□□□ -1.9
USP53Q70EK8 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
USP53Q70EK8 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
USP53Q70EK8 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
USP53Q70EK8 AC080128.1-201ENST00000474389 1917 ntBASIC3.15□□□□□ -1.9
USP53Q70EK8 MIR300-201ENST00000401138 83 ntBASIC3.15□□□□□ -1.91
USP53Q70EK8 MIR1283-1-201ENST00000408494 87 ntBASIC3.15□□□□□ -1.91
USP53Q70EK8 RNA5SP293-201ENST00000410527 113 ntBASIC3.15□□□□□ -1.91
USP53Q70EK8 AC010401.1-201ENST00000463867 348 ntBASIC3.15□□□□□ -1.91
USP53Q70EK8 AC109925.1-201ENST00000478069 331 ntBASIC3.15□□□□□ -1.91
USP53Q70EK8 RN7SL429P-201ENST00000479090 223 ntBASIC3.15□□□□□ -1.91
USP53Q70EK8 RN7SL489P-201ENST00000486185 223 ntBASIC3.15□□□□□ -1.91
USP53Q70EK8 RN7SL327P-201ENST00000488659 223 ntBASIC3.15□□□□□ -1.91
USP53Q70EK8 SRIP1-201ENST00000489235 288 ntBASIC3.15□□□□□ -1.91
USP53Q70EK8 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC3.15□□□□□ -1.91
USP53Q70EK8 uc_338.1-201ENST00000612113 180 ntBASIC3.15□□□□□ -1.91
USP53Q70EK8 RN7SL853P-201ENST00000617250 223 ntBASIC3.15□□□□□ -1.91
USP53Q70EK8 AC073349.3-201ENST00000617616 186 ntBASIC3.15□□□□□ -1.91
USP53Q70EK8 AL137790.1-201ENST00000634283 177 ntBASIC3.15□□□□□ -1.91
USP53Q70EK8 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.15□□□□□ -1.91
USP53Q70EK8 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
USP53Q70EK8 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
USP53Q70EK8 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
USP53Q70EK8 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
USP53Q70EK8 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC3.14□□□□□ -1.91
USP53Q70EK8 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
USP53Q70EK8 RNU1-70P-201ENST00000362618 164 ntBASIC3.14□□□□□ -1.91
USP53Q70EK8 RNU6-324P-201ENST00000363957 106 ntBASIC3.14□□□□□ -1.91
USP53Q70EK8 RNU6-301P-201ENST00000384277 107 ntBASIC3.14□□□□□ -1.91
USP53Q70EK8 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.14□□□□□ -1.91
USP53Q70EK8 RNU7-14P-201ENST00000459331 62 ntBASIC3.14□□□□□ -1.91
USP53Q70EK8 RN7SL863P-201ENST00000462370 296 ntBASIC3.14□□□□□ -1.91
USP53Q70EK8 AC090515.1-201ENST00000465295 476 ntBASIC3.14□□□□□ -1.91
USP53Q70EK8 AC109329.2-201ENST00000519658 482 ntBASIC3.14□□□□□ -1.91
USP53Q70EK8 Z83818.1-201ENST00000603584 150 ntBASIC3.14□□□□□ -1.91
USP53Q70EK8 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.14□□□□□ -1.91
USP53Q70EK8 MAPK10-362ENST00000641864 4484 ntBASIC3.14□□□□□ -1.91
USP53Q70EK8 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
USP53Q70EK8 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 171.4 ms