Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MTATP6P16-201ENST00000434543 526 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 RNU6-977P-201ENST00000516411 103 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC-0.34□□□□□ -2.46
USF3Q68DE3 MRPS36P4-201ENST00000534436 298 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC-0.34□□□□□ -2.46
USF3Q68DE3 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC-0.34□□□□□ -2.46
USF3Q68DE3 ZNF971P-201ENST00000562068 1249 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC-0.34□□□□□ -2.46
USF3Q68DE3 MIR4804-201ENST00000581683 73 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 MIR4753-201ENST00000585119 83 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 AC092447.9-201ENST00000603395 144 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 RPL17P51-201ENST00000605218 238 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC-0.34□□□□□ -2.46
USF3Q68DE3 AC015726.2-201ENST00000620112 122 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 AC093875.1-201ENST00000623688 504 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.34□□□□□ -2.46
USF3Q68DE3 SNORD115-24-201ENST00000363528 82 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 SNORD118-201ENST00000363593 134 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 RNA5SP275-201ENST00000363936 118 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 RNU6-1026P-201ENST00000384465 108 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 MIR549A-201ENST00000385268 96 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 RNA5SP109-201ENST00000391010 116 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 MRPL42P3-201ENST00000401492 326 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 AC096531.1-201ENST00000419107 107 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 HSFY7P-201ENST00000432672 318 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 USP9YP28-201ENST00000435142 589 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 HSFY8P-201ENST00000437934 318 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 MTCO1P27-201ENST00000448269 226 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 AC105185.1-201ENST00000518705 535 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 AC005176.2-201ENST00000596933 147 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 AL117336.2-201ENST00000602435 335 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 AC009994.1-201ENST00000606889 253 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 AL355073.2-201ENST00000612106 557 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 AC026585.1-201ENST00000619582 524 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 U3.4-201ENST00000363352 213 ntBASIC-0.35□□□□□ -2.47
USF3Q68DE3 SNORD114-12-201ENST00000365400 75 ntBASIC-0.35□□□□□ -2.47
USF3Q68DE3 MIR593-201ENST00000384856 100 ntBASIC-0.35□□□□□ -2.47
USF3Q68DE3 AL590632.1-201ENST00000424289 371 ntBASIC-0.35□□□□□ -2.47
USF3Q68DE3 AL392103.1-201ENST00000447000 198 ntBASIC-0.35□□□□□ -2.47
USF3Q68DE3 AC022447.4-201ENST00000504053 364 ntBASIC-0.35□□□□□ -2.47
USF3Q68DE3 RBBP4P6-201ENST00000508098 202 ntBASIC-0.35□□□□□ -2.47
USF3Q68DE3 RNU6-677P-201ENST00000516914 101 ntBASIC-0.35□□□□□ -2.47
USF3Q68DE3 MIR3912-201ENST00000577566 105 ntBASIC-0.35□□□□□ -2.47
USF3Q68DE3 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC-0.35□□□□□ -2.47
USF3Q68DE3 AL391099.1-201ENST00000624635 187 ntBASIC-0.35□□□□□ -2.47
USF3Q68DE3 RNY4P24-201ENST00000362735 96 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 RNU5E-6P-201ENST00000365574 115 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 MIR19A-201ENST00000384878 82 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 TIMM9P3-201ENST00000428659 274 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 AL133217.1-201ENST00000450980 425 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC-0.36□□□□□ -2.47
USF3Q68DE3 AC007751.1-201ENST00000529260 376 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 AC064872.1-201ENST00000604823 1072 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 AL158042.1-201ENST00000605338 460 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 PART1_2.1-201ENST00000612397 250 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 MIR8064-201ENST00000612863 90 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 AL359547.2-201ENST00000615810 418 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 U4.7-201ENST00000638126 106 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 MIRLET7C-201ENST00000362160 84 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 RNU6-378P-201ENST00000384324 107 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 PCNPP5-201ENST00000452246 481 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 RNY4P37-201ENST00000516225 96 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 SNORA40.12-201ENST00000516329 111 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 RNU6-320P-201ENST00000516511 106 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 AC087883.1-201ENST00000551882 391 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 MIR5697-201ENST00000578045 78 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 BCRP9-201ENST00000605312 388 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 Z99289.3-201ENST00000605586 594 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 AC124016.2-201ENST00000610058 665 ntBASIC-0.36□□□□□ -2.47
USF3Q68DE3 MIR1-1-201ENST00000362147 71 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 RNU1-76P-201ENST00000362903 159 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 SNORD32A-201ENST00000364805 84 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 MIR1253-201ENST00000408273 105 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 RPL23AP30-201ENST00000432419 501 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC-0.37□□□□□ -2.47
USF3Q68DE3 MTND3P5-201ENST00000512798 333 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 RNU6-583P-201ENST00000516012 92 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC-0.37□□□□□ -2.47
USF3Q68DE3 MIR5708-201ENST00000579723 85 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 AC078795.3-201ENST00000602913 472 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 AC097478.2-201ENST00000610572 514 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 AC112204.3-201ENST00000623822 332 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 MIR6079-201ENST00000635807 62 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 SNORA25.3-201ENST00000363205 127 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 Y_RNA.453-201ENST00000384223 109 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 RNU6-440P-201ENST00000390882 105 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 MIR300-201ENST00000401138 83 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 RNU6-613P-201ENST00000410412 108 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 RNU2-59P-201ENST00000410482 191 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 RNU6-1304P-201ENST00000411374 106 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 MTND3P17-201ENST00000416968 344 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 AL953862.1-201ENST00000423016 168 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC-0.37□□□□□ -2.47
USF3Q68DE3 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC-0.37□□□□□ -2.47
USF3Q68DE3 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC-0.37□□□□□ -2.47
USF3Q68DE3 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC-0.37□□□□□ -2.47
USF3Q68DE3 AC027288.2-201ENST00000553028 243 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 AC008752.3-201ENST00000588113 712 ntBASIC-0.37□□□□□ -2.47
USF3Q68DE3 MTND5P33-201ENST00000571250 1450 ntBASIC-0.38□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms