Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL391903.3-201ENST00000612158 163 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 AC009159.2-201ENST00000617603 606 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 snoZ196.1-201ENST00000625269 89 ntBASIC0.08□□□□□ -2.4
FOXA3P55318 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.08□□□□□ -2.4
FOXA3P55318 AL589743.1-201ENST00000551932 2712 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 RNU5E-10P-201ENST00000363506 118 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 SNORA20.2-201ENST00000383922 131 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 RNU1-139P-201ENST00000391307 165 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 Y_RNA.608-201ENST00000410647 95 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 AL663109.1-201ENST00000411498 844 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 AL354692.1-201ENST00000423044 315 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 AC009237.7-201ENST00000447357 229 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 AC074290.1-201ENST00000448883 135 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 RPS20P10-201ENST00000451209 253 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 MTCO2P6-201ENST00000463134 685 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.07□□□□□ -2.4
FOXA3P55318 RPL39P5-202ENST00000512505 151 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 RNU7-12P-201ENST00000516030 62 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 RNA5SP220-201ENST00000516298 104 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.07□□□□□ -2.4
FOXA3P55318 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.07□□□□□ -2.4
FOXA3P55318 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.07□□□□□ -2.4
FOXA3P55318 AC016256.1-201ENST00000547971 354 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 AC004584.2-201ENST00000570407 410 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 AC005771.1-201ENST00000585581 349 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 AL162424.1-201ENST00000602325 221 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 AC069431.2-201ENST00000604149 1099 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 AC112191.3-201ENST00000604371 277 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 AL359999.1-201ENST00000604513 294 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 RNU6-94P-201ENST00000607728 107 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 AC004832.4-201ENST00000608952 331 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 AL359697.1-201ENST00000624879 587 ntBASIC0.07□□□□□ -2.4
FOXA3P55318 MIR103A1-201ENST00000362165 78 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 RNA5SP264-201ENST00000363115 107 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 RNU6-169P-201ENST00000365336 107 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 RNU6-424P-201ENST00000384367 105 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 RNU6-636P-201ENST00000384598 107 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 RNU6-1067P-201ENST00000384752 107 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 MIR586-201ENST00000385035 97 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 RNA5SP504-201ENST00000410676 117 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.06□□□□□ -2.4
FOXA3P55318 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC0.06□□□□□ -2.4
FOXA3P55318 AC105313.1-201ENST00000509121 353 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.06□□□□□ -2.4
FOXA3P55318 RNU6-1110P-201ENST00000516462 101 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 RNU1-117P-201ENST00000517041 158 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 SNORA25.17-201ENST00000517184 124 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.06□□□□□ -2.4
FOXA3P55318 AC026470.2-201ENST00000561492 181 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 AC122133.1-201ENST00000613964 233 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 AC027807.2-201ENST00000616099 408 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 AL049777.1-201ENST00000622740 518 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 AL078596.1-201ENST00000624856 447 ntBASIC0.06□□□□□ -2.4
FOXA3P55318 RNU5F-6P-201ENST00000362979 116 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 SNORA25.3-201ENST00000363205 127 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 Y_RNA.265-201ENST00000364677 108 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 RNU6-1200P-201ENST00000384162 107 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 RNU6-393P-201ENST00000384475 107 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 SNORD70.1-201ENST00000391007 85 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 RNA5SP511-201ENST00000410487 115 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 AC008134.1-201ENST00000420943 193 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 MTCO2P34-201ENST00000421994 607 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.05□□□□□ -2.4
FOXA3P55318 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC0.05□□□□□ -2.4
FOXA3P55318 AC104850.1-201ENST00000435940 476 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.05□□□□□ -2.4
FOXA3P55318 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC0.05□□□□□ -2.4
FOXA3P55318 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC0.05□□□□□ -2.4
FOXA3P55318 SNORD111.1-201ENST00000516421 86 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 AC022868.1-201ENST00000517767 391 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC0.05□□□□□ -2.4
FOXA3P55318 RSL24D1P11-201ENST00000591045 491 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 AL117336.2-201ENST00000602435 335 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 SNORA28-201ENST00000606769 126 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC0.05□□□□□ -2.4
FOXA3P55318 AL138726.1-201ENST00000614873 333 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 AC007014.2-201ENST00000615581 479 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 SEPT14P17-201ENST00000617978 177 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 AC022418.1-201ENST00000624118 445 ntBASIC0.05□□□□□ -2.4
FOXA3P55318 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.05□□□□□ -2.4
FOXA3P55318 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.04□□□□□ -2.4
FOXA3P55318 MIR103A2-201ENST00000362154 78 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 Y_RNA.354-201ENST00000365448 111 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 RNU6-42P-201ENST00000384165 107 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 SNORA67.2-201ENST00000384300 149 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 Y_RNA.480-201ENST00000384364 102 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 RNU6-83P-201ENST00000384568 112 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 MIR140-201ENST00000385282 100 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 RNA5SP494-201ENST00000410653 129 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 RNU2-70P-201ENST00000410718 179 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 MRPS18CP6-201ENST00000423587 223 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.04□□□□□ -2.4
FOXA3P55318 RPL31P35-201ENST00000431058 377 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 MTCO1P19-201ENST00000443487 500 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 USP9YP29-201ENST00000445112 563 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.04□□□□□ -2.4
FOXA3P55318 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.04□□□□□ -2.4
FOXA3P55318 MTCO2P18-201ENST00000457151 658 ntBASIC0.04□□□□□ -2.4
FOXA3P55318 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.04□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms