Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC090740.1-201ENST00000623193 2262 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 ICE2P2-201ENST00000483823 2787 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 Y_RNA.27-201ENST00000362540 103 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-212P-201ENST00000362642 104 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-37P-201ENST00000362692 107 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 Y_RNA.150-201ENST00000363562 102 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 SNORD27-201ENST00000363981 72 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNY3P11-201ENST00000364153 102 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-11P-201ENST00000364234 107 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 Y_RNA.274-201ENST00000364714 101 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 U3.13-201ENST00000364804 214 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-25P-201ENST00000383873 107 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-48P-201ENST00000384161 107 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 Y_RNA.461-201ENST00000384263 103 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 Y_RNA.462-201ENST00000384268 102 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 Y_RNA.478-201ENST00000384358 107 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-16P-201ENST00000384385 107 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-15P-201ENST00000384534 107 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-29P-201ENST00000384637 107 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-700P-201ENST00000391043 107 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-1203P-201ENST00000410703 110 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-130P-201ENST00000411112 103 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-325P-201ENST00000411132 105 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 PPP1R11P2-201ENST00000423543 382 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 AL353997.1-201ENST00000432936 108 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-953P-201ENST00000459154 107 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.72□□□□□ -2.13
COL4A4P53420 AC113155.1-201ENST00000511141 769 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-677P-201ENST00000516914 101 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-143P-201ENST00000516942 93 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 MIR2355-201ENST00000517199 87 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC1.72□□□□□ -2.13
COL4A4P53420 MIR4643-201ENST00000577473 78 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 RAC1P9-201ENST00000604990 392 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 MIR3976-201ENST00000606807 139 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 AC006023.2-201ENST00000609916 167 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 MIR1244-1-201ENST00000612829 85 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.72□□□□□ -2.13
COL4A4P53420 MIR1244-3-201ENST00000635744 85 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 MIR1244-2-201ENST00000636449 85 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 MIR1244-4-202ENST00000636813 85 ntBASIC1.72□□□□□ -2.13
COL4A4P53420 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.72□□□□□ -2.13
COL4A4P53420 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.72□□□□□ -2.13
COL4A4P53420 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
COL4A4P53420 RNU6-595P-201ENST00000363944 107 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 Y_RNA.352-201ENST00000365439 102 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 RNU6-662P-201ENST00000384253 104 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 Y_RNA.526-201ENST00000384572 110 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 Y_RNA.562-201ENST00000384695 113 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 SNORD115-46-201ENST00000390982 71 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 MTCO2P33-201ENST00000402100 465 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 MIR1250-201ENST00000408098 113 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 RNA5SP494-201ENST00000410653 129 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 RNU2-25P-201ENST00000411041 191 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 CYCSP33-201ENST00000414485 327 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 SSXP9-201ENST00000417503 292 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.71□□□□□ -2.14
COL4A4P53420 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC1.71□□□□□ -2.14
COL4A4P53420 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
COL4A4P53420 AC090774.1-201ENST00000435925 246 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 AC090515.1-201ENST00000465295 476 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 MED28P2-201ENST00000475771 317 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 HMGN1P7-201ENST00000491722 313 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.71□□□□□ -2.14
COL4A4P53420 RNU6-397P-201ENST00000516226 104 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 Y_RNA.687-201ENST00000516558 91 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 SNORA40.15-201ENST00000516884 107 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 RNU6-56P-201ENST00000516986 93 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 AC109479.2-201ENST00000517842 174 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.71□□□□□ -2.14
COL4A4P53420 AC090517.1-201ENST00000569307 266 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 SNORD53B-201ENST00000577887 78 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 MIR1273C-201ENST00000578669 77 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 MIR4285-201ENST00000581001 85 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 MZT1P2-201ENST00000604387 248 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 AC006329.2-201ENST00000611491 394 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 FTX_2.1-201ENST00000618816 94 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 uc_338.20-201ENST00000621563 178 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.71□□□□□ -2.14
COL4A4P53420 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
COL4A4P53420 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
COL4A4P53420 RNU6-989P-201ENST00000362756 107 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 snoU2_19.2-201ENST00000363024 80 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 RNU4-42P-201ENST00000364738 142 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 Y_RNA.416-201ENST00000384014 113 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 RNU6-339P-201ENST00000384310 107 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 Y_RNA.555-201ENST00000384673 110 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.71□□□□□ -2.14
COL4A4P53420 AC092809.3-201ENST00000415453 231 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 TMEM167AP1-201ENST00000423409 219 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 LAMTOR3P1-201ENST00000428620 370 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC1.71□□□□□ -2.14
COL4A4P53420 DAP3P1-201ENST00000441522 278 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
COL4A4P53420 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC1.71□□□□□ -2.14
COL4A4P53420 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.71□□□□□ -2.14
COL4A4P53420 SNORA31.6-201ENST00000516241 130 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 Y_RNA.700-201ENST00000516806 100 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 AC121758.2-201ENST00000553271 193 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 217.7 ms