Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 Y_RNA.675-201ENST00000516389 149 ntBASIC2.12□□□□□ -2.07
MSH2P43246 RNU6-264P-201ENST00000517134 104 ntBASIC2.12□□□□□ -2.07
MSH2P43246 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.12□□□□□ -2.07
MSH2P43246 UBL5P4-201ENST00000562584 236 ntBASIC2.12□□□□□ -2.07
MSH2P43246 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.12□□□□□ -2.07
MSH2P43246 AC004584.2-201ENST00000570407 410 ntBASIC2.12□□□□□ -2.07
MSH2P43246 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
MSH2P43246 AL109918.3-201ENST00000603072 338 ntBASIC2.12□□□□□ -2.07
MSH2P43246 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
MSH2P43246 RNU6-874P-201ENST00000362390 105 ntBASIC2.11□□□□□ -2.07
MSH2P43246 RNU6-99P-201ENST00000364721 107 ntBASIC2.11□□□□□ -2.07
MSH2P43246 RNU6-438P-201ENST00000365561 103 ntBASIC2.11□□□□□ -2.07
MSH2P43246 RNU6-1026P-201ENST00000384465 108 ntBASIC2.11□□□□□ -2.07
MSH2P43246 AC007098.1-201ENST00000420122 367 ntBASIC2.11□□□□□ -2.07
MSH2P43246 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.11□□□□□ -2.07
MSH2P43246 AL356320.1-201ENST00000429616 163 ntBASIC2.11□□□□□ -2.07
MSH2P43246 AL445305.1-201ENST00000432577 575 ntBASIC2.11□□□□□ -2.07
MSH2P43246 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.11□□□□□ -2.07
MSH2P43246 RPL23AP42-201ENST00000471152 471 ntBASIC2.11□□□□□ -2.07
MSH2P43246 MRPS17P9-201ENST00000511924 393 ntBASIC2.11□□□□□ -2.07
MSH2P43246 RNU6-470P-201ENST00000515954 104 ntBASIC2.11□□□□□ -2.07
MSH2P43246 SNORA25.14-201ENST00000516481 132 ntBASIC2.11□□□□□ -2.07
MSH2P43246 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.11□□□□□ -2.07
MSH2P43246 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.11□□□□□ -2.07
MSH2P43246 SUB1P3-201ENST00000564581 315 ntBASIC2.11□□□□□ -2.07
MSH2P43246 CYP2C61P-201ENST00000604072 290 ntBASIC2.11□□□□□ -2.07
MSH2P43246 AC126177.8-201ENST00000618339 1015 ntBASIC2.11□□□□□ -2.07
MSH2P43246 MIR6873-201ENST00000622788 63 ntBASIC2.11□□□□□ -2.07
MSH2P43246 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.11□□□□□ -2.07
MSH2P43246 AC064859.1-201ENST00000624741 174 ntBASIC2.11□□□□□ -2.07
MSH2P43246 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.1□□□□□ -2.07
MSH2P43246 RNU6-222P-201ENST00000362438 107 ntBASIC2.1□□□□□ -2.07
MSH2P43246 RNU6-545P-201ENST00000362681 104 ntBASIC2.1□□□□□ -2.07
MSH2P43246 RNU6-873P-201ENST00000363833 107 ntBASIC2.1□□□□□ -2.07
MSH2P43246 MIR10B-201ENST00000385011 110 ntBASIC2.1□□□□□ -2.07
MSH2P43246 RNU1-139P-201ENST00000391307 165 ntBASIC2.1□□□□□ -2.07
MSH2P43246 SUMO2P12-201ENST00000405924 140 ntBASIC2.1□□□□□ -2.07
MSH2P43246 AC022028.1-201ENST00000412054 408 ntBASIC2.1□□□□□ -2.07
MSH2P43246 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.1□□□□□ -2.07
MSH2P43246 AC123900.1-201ENST00000420390 96 ntBASIC2.1□□□□□ -2.07
MSH2P43246 AC244636.1-201ENST00000421152 228 ntBASIC2.1□□□□□ -2.07
MSH2P43246 AC092423.1-201ENST00000430165 186 ntBASIC2.1□□□□□ -2.07
MSH2P43246 USP9YP16-201ENST00000430287 407 ntBASIC2.1□□□□□ -2.07
MSH2P43246 USP9YP23-201ENST00000455085 407 ntBASIC2.1□□□□□ -2.07
MSH2P43246 AC016925.1-201ENST00000458303 298 ntBASIC2.1□□□□□ -2.07
MSH2P43246 RNA5SP57-201ENST00000459463 123 ntBASIC2.1□□□□□ -2.07
MSH2P43246 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.1□□□□□ -2.07
MSH2P43246 C8orf59P2-201ENST00000603441 271 ntBASIC2.1□□□□□ -2.07
MSH2P43246 AC130454.1-201ENST00000622948 401 ntBASIC2.1□□□□□ -2.07
MSH2P43246 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.09□□□□□ -2.07
MSH2P43246 MTND5P16-201ENST00000460269 1703 ntBASIC2.09□□□□□ -2.07
MSH2P43246 MTND5P6-201ENST00000422338 1798 ntBASIC2.09□□□□□ -2.07
MSH2P43246 RNU6-23P-201ENST00000363283 107 ntBASIC2.09□□□□□ -2.07
MSH2P43246 Y_RNA.187-201ENST00000363918 113 ntBASIC2.09□□□□□ -2.07
MSH2P43246 RNU6-280P-201ENST00000364145 104 ntBASIC2.09□□□□□ -2.07
MSH2P43246 Y_RNA.364-201ENST00000365532 101 ntBASIC2.09□□□□□ -2.07
MSH2P43246 Y_RNA.509-201ENST00000384506 99 ntBASIC2.09□□□□□ -2.07
MSH2P43246 SNORA8-201ENST00000384574 139 ntBASIC2.09□□□□□ -2.07
MSH2P43246 Y_RNA.577-201ENST00000384794 101 ntBASIC2.09□□□□□ -2.07
MSH2P43246 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
MSH2P43246 MIR300-201ENST00000401138 83 ntBASIC2.09□□□□□ -2.07
MSH2P43246 RNU2-40P-201ENST00000410833 196 ntBASIC2.09□□□□□ -2.07
MSH2P43246 AF228730.4-201ENST00000421457 183 ntBASIC2.09□□□□□ -2.07
MSH2P43246 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.09□□□□□ -2.07
MSH2P43246 TRBV12-1-201ENST00000479785 344 ntBASIC2.09□□□□□ -2.07
MSH2P43246 RN7SL274P-201ENST00000492268 272 ntBASIC2.09□□□□□ -2.07
MSH2P43246 RNU6-1114P-201ENST00000516022 107 ntBASIC2.09□□□□□ -2.07
MSH2P43246 RNU6-344P-201ENST00000516635 111 ntBASIC2.09□□□□□ -2.07
MSH2P43246 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.09□□□□□ -2.07
MSH2P43246 AC087441.2-201ENST00000529141 262 ntBASIC2.09□□□□□ -2.07
MSH2P43246 RRN3P3-201ENST00000549207 578 ntBASIC2.09□□□□□ -2.07
MSH2P43246 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.09□□□□□ -2.07
MSH2P43246 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.09□□□□□ -2.07
MSH2P43246 AL096840.1-201ENST00000603287 93 ntBASIC2.09□□□□□ -2.07
MSH2P43246 MIR1244-1-201ENST00000612829 85 ntBASIC2.09□□□□□ -2.07
MSH2P43246 AC104985.2-201ENST00000620598 500 ntBASIC2.09□□□□□ -2.07
MSH2P43246 MIR1244-3-201ENST00000635744 85 ntBASIC2.09□□□□□ -2.07
MSH2P43246 MIR1244-2-201ENST00000636449 85 ntBASIC2.09□□□□□ -2.07
MSH2P43246 MIR1244-4-202ENST00000636813 85 ntBASIC2.09□□□□□ -2.07
MSH2P43246 MTND5P10-201ENST00000603719 1809 ntBASIC2.08□□□□□ -2.08
MSH2P43246 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.08□□□□□ -2.08
MSH2P43246 RNA5SP126-201ENST00000365092 109 ntBASIC2.08□□□□□ -2.08
MSH2P43246 RNU6-1040P-201ENST00000383974 107 ntBASIC2.08□□□□□ -2.08
MSH2P43246 RNU6-160P-201ENST00000384591 107 ntBASIC2.08□□□□□ -2.08
MSH2P43246 MIR559-201ENST00000385188 96 ntBASIC2.08□□□□□ -2.08
MSH2P43246 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
MSH2P43246 RNA5SP213-201ENST00000391031 106 ntBASIC2.08□□□□□ -2.08
MSH2P43246 MIR1283-1-201ENST00000408494 87 ntBASIC2.08□□□□□ -2.08
MSH2P43246 RNA5SP425-201ENST00000410336 112 ntBASIC2.08□□□□□ -2.08
MSH2P43246 RNA5SP501-201ENST00000410990 112 ntBASIC2.08□□□□□ -2.08
MSH2P43246 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.08□□□□□ -2.08
MSH2P43246 RNU7-87P-201ENST00000459343 62 ntBASIC2.08□□□□□ -2.08
MSH2P43246 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC2.08□□□□□ -2.08
MSH2P43246 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.08□□□□□ -2.08
MSH2P43246 SNRPGP18-201ENST00000553000 214 ntBASIC2.08□□□□□ -2.08
MSH2P43246 AC091544.4-201ENST00000555268 342 ntBASIC2.08□□□□□ -2.08
MSH2P43246 AC090617.3-201ENST00000573670 475 ntBASIC2.08□□□□□ -2.08
MSH2P43246 AC005296.1-201ENST00000616145 209 ntBASIC2.08□□□□□ -2.08
MSH2P43246 U1.36-201ENST00000620684 176 ntBASIC2.08□□□□□ -2.08
MSH2P43246 AC091932.3-201ENST00000624223 323 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 160.4 ms