Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC2.3□□□□□ -2.04
SHMT1P34896 MIR1244-3-201ENST00000635744 85 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 MIR1244-2-201ENST00000636449 85 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 MIR1244-4-202ENST00000636813 85 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SHMT1P34896 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
SHMT1P34896 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
SHMT1P34896 AC005336.3-201ENST00000623833 2679 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 ZNF204P-201ENST00000416749 2397 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 Y_RNA.252-201ENST00000364556 101 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 SNORD42.2-201ENST00000365570 69 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 Y_RNA.395-201ENST00000383945 109 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 RNU6-611P-201ENST00000384276 104 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 MIR487A-201ENST00000385009 80 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 USP9YP16-201ENST00000430287 407 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 AC003989.2-201ENST00000440224 169 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 UBE2V1P7-201ENST00000446395 340 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.29□□□□□ -2.04
SHMT1P34896 USP9YP23-201ENST00000455085 407 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 RNU7-87P-201ENST00000459343 62 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 Y_RNA.638-201ENST00000459374 113 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 AP000870.1-201ENST00000472927 406 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 AC018868.1-201ENST00000491307 315 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 RPS23P5-201ENST00000495419 428 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.29□□□□□ -2.04
SHMT1P34896 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.29□□□□□ -2.04
SHMT1P34896 RNA5SP182-201ENST00000516064 82 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 RNU6-991P-201ENST00000516168 107 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 RNU6-965P-201ENST00000516721 96 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 AC091144.1-201ENST00000519573 138 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 AC090617.3-201ENST00000573670 475 ntBASIC2.29□□□□□ -2.04
SHMT1P34896 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
SHMT1P34896 MTND5P16-201ENST00000460269 1703 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
SHMT1P34896 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
SHMT1P34896 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
SHMT1P34896 RNU4-76P-201ENST00000364509 141 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 Y_RNA.314-201ENST00000365114 102 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 RNU6-234P-201ENST00000365229 104 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 SNORA18.2-201ENST00000383865 132 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 MIR583-201ENST00000384846 75 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 SNORA69.1-201ENST00000390904 137 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 SNORA40.18-201ENST00000391200 128 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 RNU1-139P-201ENST00000391307 165 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 AC019129.1-201ENST00000403786 261 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.28□□□□□ -2.04
SHMT1P34896 AC107032.1-201ENST00000485945 480 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.28□□□□□ -2.04
SHMT1P34896 AC105758.1-201ENST00000506038 399 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.28□□□□□ -2.04
SHMT1P34896 RNU6-1114P-201ENST00000516022 107 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 RNU5F-4P-201ENST00000516581 114 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 RNU2-44P-201ENST00000516795 194 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 MIR2355-201ENST00000517199 87 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 AC009127.3-201ENST00000570531 403 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.28□□□□□ -2.04
SHMT1P34896 AL132822.1-201ENST00000617063 513 ntBASIC2.28□□□□□ -2.04
SHMT1P34896 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.27□□□□□ -2.05
SHMT1P34896 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
SHMT1P34896 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.27□□□□□ -2.05
SHMT1P34896 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
SHMT1P34896 MIR369-201ENST00000362155 70 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 Y_RNA.5-201ENST00000362334 102 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 RNU6-874P-201ENST00000362390 105 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 RNU1-76P-201ENST00000362903 159 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 Y_RNA.112-201ENST00000363250 102 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 Y_RNA.358-201ENST00000365491 99 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 RNU6-482P-201ENST00000391068 107 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 RNU2-48P-201ENST00000410694 191 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 WARS2P1-201ENST00000429678 537 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 AC004386.2-201ENST00000441858 148 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.27□□□□□ -2.05
SHMT1P34896 RPL23AP7-203ENST00000449021 469 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 AL021397.1-201ENST00000451806 248 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.27□□□□□ -2.05
SHMT1P34896 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.27□□□□□ -2.05
SHMT1P34896 Y_RNA.661-201ENST00000516003 99 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 MIR449C-201ENST00000516047 92 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 RNU6-667P-201ENST00000517186 102 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 AC034114.1-201ENST00000520293 285 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 AC023442.1-201ENST00000531247 422 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 CYCSP26-201ENST00000534107 320 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 NDUFA5P6-201ENST00000542110 379 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 MIR5006-201ENST00000583027 110 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 uc_338.22-201ENST00000622722 187 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 MIR1248-201ENST00000629190 106 ntBASIC2.27□□□□□ -2.05
SHMT1P34896 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
SHMT1P34896 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
SHMT1P34896 Y_RNA.128-201ENST00000363391 112 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 Y_RNA.813-201ENST00000364639 102 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 Y_RNA.557-201ENST00000384680 107 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 MIR10B-201ENST00000385011 110 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 AL357139.1-201ENST00000407792 426 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 Y_RNA.605-201ENST00000410577 105 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 AC114482.1-201ENST00000418010 247 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 MRPS18CP6-201ENST00000423587 223 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 AC018865.2-201ENST00000423631 129 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 MTCO2P12-201ENST00000427426 682 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 IPO7P1-201ENST00000442031 636 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms