Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNU6-611P-201ENST00000384276 104 ntBASIC2.89□□□□□ -1.95
SMARCA1P28370 RNU6-463P-201ENST00000384340 107 ntBASIC2.89□□□□□ -1.95
SMARCA1P28370 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
SMARCA1P28370 AL359511.1-201ENST00000402970 211 ntBASIC2.89□□□□□ -1.95
SMARCA1P28370 Y_RNA.597-201ENST00000410463 100 ntBASIC2.89□□□□□ -1.95
SMARCA1P28370 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
SMARCA1P28370 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.89□□□□□ -1.95
SMARCA1P28370 MIR4503-201ENST00000582187 83 ntBASIC2.89□□□□□ -1.95
SMARCA1P28370 AL356575.1-201ENST00000603008 283 ntBASIC2.89□□□□□ -1.95
SMARCA1P28370 MZT1P2-201ENST00000604387 248 ntBASIC2.89□□□□□ -1.95
SMARCA1P28370 AL049779.4-201ENST00000604500 156 ntBASIC2.89□□□□□ -1.95
SMARCA1P28370 AL670379.2-201ENST00000604983 252 ntBASIC2.89□□□□□ -1.95
SMARCA1P28370 AL357075.2-201ENST00000614906 189 ntBASIC2.89□□□□□ -1.95
SMARCA1P28370 MIR449A-201ENST00000362113 91 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 Y_RNA.105-201ENST00000363182 111 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 RNA5SP393-201ENST00000363423 117 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 RNU6-770P-201ENST00000363929 105 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 RNU6-944P-201ENST00000364023 107 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 Y_RNA.222-201ENST00000364264 102 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 Y_RNA.276-201ENST00000364732 109 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.88□□□□□ -1.95
SMARCA1P28370 RNU6-245P-201ENST00000384020 107 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 SNORD78.2-201ENST00000391076 69 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 AL079342.1-201ENST00000401460 267 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 SNORD12B-201ENST00000410433 91 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.88□□□□□ -1.95
SMARCA1P28370 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.88□□□□□ -1.95
SMARCA1P28370 DYNLT3P2-201ENST00000442517 295 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 CYP2C59P-201ENST00000457790 269 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 AC091179.3-201ENST00000474761 144 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 SNORA31.15-201ENST00000516771 132 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC2.88□□□□□ -1.95
SMARCA1P28370 AC010999.1-201ENST00000611856 324 ntBASIC2.88□□□□□ -1.95
SMARCA1P28370 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.88□□□□□ -1.95
SMARCA1P28370 Z82195.2-201ENST00000612348 18351 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 Z82209.1-201ENST00000422141 2135 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
SMARCA1P28370 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
SMARCA1P28370 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.87□□□□□ -1.95
SMARCA1P28370 RNU6-301P-201ENST00000384277 107 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 MIR29B2-201ENST00000385055 81 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 RNU2-63P-201ENST00000410792 194 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 AL513328.1-201ENST00000446460 224 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.87□□□□□ -1.95
SMARCA1P28370 RN7SL429P-201ENST00000479090 223 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 RN7SL489P-201ENST00000486185 223 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 RN7SL327P-201ENST00000488659 223 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 RNU1-104P-201ENST00000517280 175 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 SNRPGP20-201ENST00000604477 205 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.87□□□□□ -1.95
SMARCA1P28370 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 RN7SL853P-201ENST00000617250 223 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 AC005562.2-201ENST00000618264 111 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 7SK.10-201ENST00000621414 298 ntBASIC2.87□□□□□ -1.95
SMARCA1P28370 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
SMARCA1P28370 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.87□□□□□ -1.95
SMARCA1P28370 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
SMARCA1P28370 MTND5P35-201ENST00000557537 1720 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 Y_RNA.64-201ENST00000362845 102 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 Y_RNA.183-201ENST00000363882 113 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 RNA5SP240-201ENST00000365355 128 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 RNU6-196P-201ENST00000384315 107 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 RNU6-1072P-201ENST00000384703 107 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 RNU6-443P-201ENST00000384780 107 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
SMARCA1P28370 RNU6-121P-201ENST00000410525 99 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 AC009963.1-201ENST00000417265 157 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 RPS12P2-201ENST00000439728 269 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 AC004386.2-201ENST00000441858 148 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 RNU7-26P-201ENST00000458980 63 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 RPL26P26-201ENST00000480251 434 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 RNY3P15-201ENST00000516297 97 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 RNU6-586P-201ENST00000517265 104 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 MYL12BP1-201ENST00000569826 507 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.86□□□□□ -1.95
SMARCA1P28370 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.86□□□□□ -1.95
SMARCA1P28370 MIR5194-201ENST00000582634 120 ntBASIC2.86□□□□□ -1.95
SMARCA1P28370 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.86□□□□□ -1.95
SMARCA1P28370 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SMARCA1P28370 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.85□□□□□ -1.95
SMARCA1P28370 Y_RNA.19-201ENST00000362462 99 ntBASIC2.85□□□□□ -1.95
SMARCA1P28370 RNU1-62P-201ENST00000362599 164 ntBASIC2.85□□□□□ -1.95
SMARCA1P28370 RNU6-727P-201ENST00000363592 107 ntBASIC2.85□□□□□ -1.95
SMARCA1P28370 Y_RNA.179-201ENST00000363844 90 ntBASIC2.85□□□□□ -1.95
SMARCA1P28370 RNA5SP125-201ENST00000364843 120 ntBASIC2.85□□□□□ -1.95
SMARCA1P28370 Y_RNA.439-201ENST00000384119 94 ntBASIC2.85□□□□□ -1.95
SMARCA1P28370 RNU6-793P-201ENST00000384233 104 ntBASIC2.85□□□□□ -1.95
SMARCA1P28370 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
SMARCA1P28370 LINC01399-202ENST00000458450 244 ntBASIC2.85□□□□□ -1.95
SMARCA1P28370 CKS1BP2-201ENST00000497342 240 ntBASIC2.85□□□□□ -1.95
SMARCA1P28370 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.85□□□□□ -1.95
SMARCA1P28370 MIR449C-201ENST00000516047 92 ntBASIC2.85□□□□□ -1.95
SMARCA1P28370 RNU2-44P-201ENST00000516795 194 ntBASIC2.85□□□□□ -1.95
SMARCA1P28370 AC026470.2-201ENST00000561492 181 ntBASIC2.85□□□□□ -1.95
SMARCA1P28370 AC136932.1-201ENST00000574771 208 ntBASIC2.85□□□□□ -1.95
SMARCA1P28370 TCL6_2.1-201ENST00000615162 119 ntBASIC2.85□□□□□ -1.95
SMARCA1P28370 MIR6715A-201ENST00000615929 79 ntBASIC2.85□□□□□ -1.95
SMARCA1P28370 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
SMARCA1P28370 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms